Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1232
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   5.2  
SB_29237| Best HMM Match : I-set (HMM E-Value=0)                       28   5.2  
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       28   6.9  
SB_12380| Best HMM Match : SAM_2 (HMM E-Value=1.6e-14)                 27   9.1  

>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 390 SRTTAKMLPAVLNPCLVFALIG*IGTYIKPKIQ 488
           SRT   +L  VL  C +FAL+G +  Y+  KIQ
Sbjct: 519 SRTATNVLLIVLTACTIFALVGML--YLGRKIQ 549


>SB_29237| Best HMM Match : I-set (HMM E-Value=0)
          Length = 869

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 309 IVQENPESLLGPSTINTVMSSALNGVPTPLILWKPYQ 199
           ++ E P+ +     +  V+  A  GVP P ++W+  Q
Sbjct: 408 VLTEEPKDMQAMEGLKVVLKCAAKGVPPPKLIWQRNQ 444


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 276 PSTINTVMSSALNGVPTPLILW 211
           P+  +TV+S  + GVP P I+W
Sbjct: 352 PADTSTVISCPIKGVPRPKIIW 373


>SB_12380| Best HMM Match : SAM_2 (HMM E-Value=1.6e-14)
          Length = 218

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 475 FI*VPI*PIKAKTKHGLRTAGSILAVV 395
           F  VP+ P K  T HGL  AG I+ VV
Sbjct: 170 FCIVPLPPKKRTTTHGLLHAGKIVVVV 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,965
Number of Sequences: 59808
Number of extensions: 373168
Number of successful extensions: 632
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)