Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1231
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 164 6e-42
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 3e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 90 2e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 85 5e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 4e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 49 4e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.035
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.081
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.25
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.25
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 5.3
SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|... 25 7.0
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 164 bits (399), Expect = 6e-42
Identities = 73/80 (91%), Positives = 75/80 (93%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
QSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREK
Sbjct: 59 QSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREK 118
Query: 435 MTHIMFETFNTPAMYVAIQA 494
MT I+FETFN PA YVAIQA
Sbjct: 119 MTQIIFETFNAPAFYVAIQA 138
Score = 122 bits (293), Expect = 4e-29
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 264
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 92.7 bits (220), Expect = 3e-20
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +3
Query: 276 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFE 455
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 456 TFNTPAMYVAIQA 494
+FN +Y+A+QA
Sbjct: 149 SFNCAGLYIAVQA 161
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 252
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 89.8 bits (213), Expect = 2e-19
Identities = 36/80 (45%), Positives = 58/80 (72%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 434
++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREK
Sbjct: 59 EAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREK 118
Query: 435 MTHIMFETFNTPAMYVAIQA 494
M MFE + +YVAIQA
Sbjct: 119 MCETMFERYGFGGVYVAIQA 138
Score = 54.8 bits (126), Expect = 8e-09
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 91 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARA 261
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 85.4 bits (202), Expect = 5e-18
Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANRE 431
Q+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+E
Sbjct: 63 QNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKE 122
Query: 432 KMTHIMFETFNTPAMYVAIQ 491
K+ +ET N PA+ ++Q
Sbjct: 123 KIAEYFYETLNVPALSFSLQ 142
Score = 67.7 bits (158), Expect = 1e-12
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 258
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.5 bits (145), Expect = 4e-11
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = +3
Query: 273 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMF 452
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 453 ETFNTPAMYVAIQ 491
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 189
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 57.6 bits (133), Expect = 1e-09
Identities = 25/67 (37%), Positives = 40/67 (59%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNT 467
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT ++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 468 PAMYVAI 488
P++ I
Sbjct: 145 PSVAYGI 151
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 198
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 49.2 bits (112), Expect = 4e-07
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +3
Query: 297 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTHIMFETFNTPAM 476
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 477 YVAIQA 494
Y+ QA
Sbjct: 134 YLTKQA 139
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 252
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 32.7 bits (71), Expect = 0.035
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +3
Query: 288 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTHIMFE 455
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 456 TFNTPAMYVAIQ 491
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.081
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +3
Query: 348 FYNELRVAPEEHPVLLTE--APLNPKANREKMTHIMFETFNTPAM---YVAIQ 491
+Y L E+HP+LLT+ A L P+ + ++ I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.25
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -2
Query: 320 IPVSDDSVFDGVFEGQDTSFALASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 141
+P + +V +TSFAL ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 140 PALHIP 123
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.25
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 245 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 84
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 247 LLHKSPSVPYRPSRPDGGAFPRSRGTR 167
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 248 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 132
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 148 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 252
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 390 LLTEAPLNPKANREKMTHIMFETFN 464
+L APL+ + +KM ++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBP8B7.31 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 177
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 259 LWPHLLHKSPSVPYRPSRPDGGAFPRSRGT 170
LWP + + P++PS+ D G GT
Sbjct: 19 LWPLWIDTHVTAPFKPSKNDPGVLIDKYGT 48
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAG 150
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,979
Number of Sequences: 5004
Number of extensions: 50736
Number of successful extensions: 151
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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