Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1229
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910...    28   5.0  
09_02_0315 - 7179332-7179949                                           28   5.0  

>10_05_0093 -
           9108883-9109068,9109156-9109248,9109363-9109441,
           9109529-9109639,9109715-9109857,9110050-9110522,
           9110568-9111075,9111241-9111810,9111883-9112119,
           9112196-9112465
          Length = 889

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = -3

Query: 410 KTFVKKSNLKIINAAYFSREAVMRFGLKGGAAVVTILRP*NLSQGGWRIYVVMSMGSSNH 231
           + F+   N ++I AAY  ++  + F +   A VVT+L P + S   +R ++ +   + N+
Sbjct: 716 RAFLHFQNKRVIKAAYNFKDQYICFLIDPKAGVVTVLDPLDYSHTMYRHFLQILQYAYNY 775


>09_02_0315 - 7179332-7179949
          Length = 205

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 136 KLTILLNGRQ*LGSAPRIADVYGLR*PLTIRWAVCSSAYKGN 11
           +L+++  GR   G A R+A+V     P  + W +CS  Y+GN
Sbjct: 73  ELSVVPRGRVPRGGA-RVAEVLIEPGPERVAWVLCSWGYEGN 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,550
Number of Sequences: 37544
Number of extensions: 294794
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)