Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1228
         (507 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0Z882 Cluster: NADH dehydrogenase subunit 5; n=2; Merm...    33   2.8  
UniRef50_Q1QD49 Cluster: Polysaccharide biosynthesis protein; n=...    32   6.5  
UniRef50_Q5A2D5 Cluster: Putative uncharacterized protein; n=2; ...    32   8.6  

>UniRef50_Q0Z882 Cluster: NADH dehydrogenase subunit 5; n=2;
           Mermithidae|Rep: NADH dehydrogenase subunit 5 -
           Agamermis sp. BH-2006
          Length = 490

 Score = 33.5 bits (73), Expect = 2.8
 Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
 Frame = +1

Query: 22  IVLLVWS*LFFYKDLTSFSYSLGFEL---F*IMSILLKSTAFMTLFSF-YFVEVGFLF 183
           +V+L ++ ++ Y+ +TSF   L F++   F ++ I+L    FMTLFS+ +F+   F F
Sbjct: 353 LVILSFTIIYSYRLITSFKMFLNFKMSVNFKMLGIILTYLMFMTLFSYMWFLNWFFSF 410


>UniRef50_Q1QD49 Cluster: Polysaccharide biosynthesis protein; n=1;
           Psychrobacter cryohalolentis K5|Rep: Polysaccharide
           biosynthesis protein - Psychrobacter cryohalolentis
           (strain K5)
          Length = 475

 Score = 32.3 bits (70), Expect = 6.5
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 25  VLLVWS*LFFYKDLTSFSYSLGFELF*IMSILLK-STAFMTLFSFYFVEVG 174
           +L +WS   FY     F + L  + + ++SI++  +TAF+++ + YF++ G
Sbjct: 124 ILYIWSNGLFYLIQNQFRWELRSKEYAVISIIMSVATAFVSVLAAYFLDYG 174


>UniRef50_Q5A2D5 Cluster: Putative uncharacterized protein; n=2;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 118

 Score = 31.9 bits (69), Expect = 8.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 365 RQKLESICISVSIFLNLITISYISGYRL 448
           + KL SIC S+++FL LI +   SG+++
Sbjct: 29  KSKLTSICASITVFLRLIVLMVSSGFKV 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,517,393
Number of Sequences: 1657284
Number of extensions: 7433899
Number of successful extensions: 15599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15596
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)