Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1228
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580...    28   3.7  
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686...    27   8.7  

>11_05_0010 - 18356835-18357080,18357475-18357672,18357780-18358046,
            18358870-18359067,18359151-18359417,18359524-18359724,
            18359807-18361363,18361499-18361859,18362602-18363467
          Length = 1386

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 344  PVDMS*RRQKLESICISVSIFLNLITISYIS 436
            P D+     +LESI IS +I +N +  SYIS
Sbjct: 1255 PFDIKVTPHQLESITISSNIVINSLAFSYIS 1285


>04_04_0289 +
           24167246-24167411,24167584-24167708,24167744-24168694,
           24168788-24168940,24169251-24169475,24170102-24170587
          Length = 701

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 483 LKVLVGIWQKTQRRYPDIYEIVMRFKNIE 397
           LK+++ +W  + RRYP ++    R + +E
Sbjct: 351 LKLMMSVWSWSPRRYPFVFGHAPRLQRLE 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,798,180
Number of Sequences: 37544
Number of extensions: 179474
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)