Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1228
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)                     28   5.1  
SB_23413| Best HMM Match : ATP-synt_8 (HMM E-Value=3.4)                27   6.7  
SB_46106| Best HMM Match : HSBP1 (HMM E-Value=3.2)                     27   8.9  
SB_11745| Best HMM Match : HALZ (HMM E-Value=0.69)                     27   8.9  

>SB_25664| Best HMM Match : DRMBL (HMM E-Value=4.3)
          Length = 353

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 265 TCDGRLAWHTKRNMALYSFYHR-NTIFNKKENR 170
           TCDG LAW  + + AL SF  +  T+ +K +++
Sbjct: 22  TCDGLLAWRKEVDAALNSFQAKLGTLVDKVDSK 54


>SB_23413| Best HMM Match : ATP-synt_8 (HMM E-Value=3.4)
          Length = 243

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = +3

Query: 270 INILFCILFKNILLLMSSQYQLSVFP*I*ADGGKSLKAFAFQFQYF*ISLRFHIYLDIAF 449
           + ++  ++   +L+LM     L V P    D   SL+  A    YF + L    +     
Sbjct: 125 VMLMVMLMVMLMLMLMVMVMVLMVMPDDNVDDDDSLRPTAINIPYFYVELSSERWSCQLL 184

Query: 450 ESSARCLPAL*DHLLTCL 503
             +A   P L  +LLTC+
Sbjct: 185 RFTAILFPVLTIYLLTCI 202


>SB_46106| Best HMM Match : HSBP1 (HMM E-Value=3.2)
          Length = 217

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 265 TCDGRLAWHTKRNMALYSFYHR-NTIFNKKEN 173
           TCDG LAW  + + AL SF  +  T+ +K ++
Sbjct: 22  TCDGLLAWRKEVDAALKSFQAKLGTLVDKVDS 53


>SB_11745| Best HMM Match : HALZ (HMM E-Value=0.69)
          Length = 278

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 265 TCDGRLAWHTKRNMALYSFYHR-NTIFNKKEN 173
           TCDG LAW  + + AL SF  +  T+ +K ++
Sbjct: 53  TCDGLLAWRKEVDAALNSFQAKLGTLVDKVDS 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027,789
Number of Sequences: 59808
Number of extensions: 228184
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)