Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1228
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   1.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   4.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   5.6  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.7  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 265 CESIYCSAYYLRTYYY 312
           CE +YCS   L T+ Y
Sbjct: 41  CERVYCSRNSLMTHIY 56


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 389 ISVSIFLNLITISYISGYRL*VFCQMPTSTLRSPANMF 502
           I ++I  +++ I  + G    ++    + +LR+P+NMF
Sbjct: 58  IGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMF 95



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 424 FIYIWISPLSLLP 462
           F + W++P ++LP
Sbjct: 177 FTWFWVTPFTVLP 189


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +2

Query: 389 ISVSIFLNLITISYISGYRL*VFCQMPTSTLRSPANMF 502
           I ++I  +++ I  + G    ++    + +LR+P+NMF
Sbjct: 58  IGLAIIYSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMF 95



 Score = 21.0 bits (42), Expect = 7.3
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +1

Query: 424 FIYIWISPLSLLP 462
           F + W++P ++LP
Sbjct: 177 FTWFWVTPFTVLP 189


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 431 ISGYRL*VFCQMPTSTLRSPANMF 502
           + G  + V+  + T +LR+P+N+F
Sbjct: 33  VMGNGMVVYIFLSTKSLRTPSNLF 56


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 155 NENNVINAVDFNKILII*NNSKPNE*LKLVRSL 57
           N+NN++     N ++ +  N +  E +KL  SL
Sbjct: 261 NDNNIVRPDFINMLMELQKNPQKLENIKLTDSL 293


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 452 VFCQMPTSTLRSPANMF 502
           V+  + T +LR+P+N+F
Sbjct: 74  VYIFLSTKSLRTPSNLF 90


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 434 SGYRL*VFCQMPTSTLRSPANMF 502
           +G  + +FC     +LR+P+NMF
Sbjct: 66  NGLVIWIFCA--AKSLRTPSNMF 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,351
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)