Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1228
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g25270.1 68414.m03135 nodulin MtN21 family protein similar to...    28   3.1  
At1g72120.1 68414.m08336 proton-dependent oligopeptide transport...    27   5.5  

>At1g25270.1 68414.m03135 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 345

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 275 IDSHVRRAIGLAYQTQHGSIFVLPSQYNFQQKRKPTST 162
           +D      + +AY+    +IF+LP    FQ+K++P  T
Sbjct: 25  VDDGTNLKVLVAYRLSFATIFMLPLALIFQRKKRPEFT 62


>At1g72120.1 68414.m08336 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 1095

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 64  LTSFSYSLGFELF*IMSILLKSTAFMTLFSFYFVEVGFLFC*KLYCDGKTNIEPC 228
           ++S  Y LG     + + L+ +T  +T  +  F+ V F F   L   G++  +PC
Sbjct: 106 ISSLIYVLGLAFLTLSAFLIPNTTEVTSSTSSFLNVLFFFSLYLVAIGQSGHKPC 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,135,762
Number of Sequences: 28952
Number of extensions: 158702
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)