Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1226
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    68   9e-13
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    31   0.13 
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   4.9  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   6.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.5  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 67.7 bits (158), Expect = 9e-13
 Identities = 29/66 (43%), Positives = 46/66 (69%)
 Frame = -1

Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
           AG HFNP  + HG   A +RHVGDLGN++S    ++ +    D+V+SL+G ++IIGR++V
Sbjct: 61  AGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNI-KTTFSDSVISLFGANSIIGRTIV 119

Query: 271 VHTDKE 254
           +H  ++
Sbjct: 120 IHAGED 125



 Score = 30.7 bits (66), Expect = 0.13
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 500 GFHVHEYGDTSTDCTS 453
           GFH+H++GD +  CTS
Sbjct: 45  GFHIHQFGDNTNGCTS 60



 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 263 GQRDLGLTDHPLSKTTGNSGGRLGCGIIAI 174
           G+ DLG      S  TGN+G R  CG+I I
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 13  LHVEFYS*SQFSFEKQVTSFLKFSFEKQMTSSFDCVLHVEFYS 141
           +H    +  +F+ EK + +F+K  F+K+ + ++ C++   F S
Sbjct: 18  IHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGS 60


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 425 IGGIKMLTGLTCNRCSCRHIRA 490
           I G K   G+TC R +  H+RA
Sbjct: 272 IAGTKDRRGVTCQRVAIHHVRA 293


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = -1

Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
           G     TN + G   A +  +  + N  + G      +N    +   YGP NI+G + VV
Sbjct: 363 GTVLGTTNVNAGVQSANVSFI--VNNTAAAGLPLFQILNGTTVIAQGYGPLNILGNNSVV 420


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 135  LLVKRVKTMTSFTYGNYSASQTA 203
            L+++RV +++   YGN   +QTA
Sbjct: 3653 LIMRRVASLSQVAYGNLPVNQTA 3675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,467
Number of Sequences: 5004
Number of extensions: 43725
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)