Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1226
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 77 1e-14
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 74 6e-14
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 73 1e-13
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 69 3e-12
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 38 0.005
11_01_0762 + 6400052-6401845,6401977-6402609 29 2.1
09_02_0233 + 6113335-6113416,6113550-6113596,6114129-6114419,611... 28 3.7
05_01_0067 + 467749-467851,467964-468010,468598-468846,469078-46... 28 5.0
01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255 27 6.5
01_05_0090 + 18038219-18038421,18039365-18039488,18040229-180403... 27 6.5
01_06_0581 - 30386018-30386440 27 8.7
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/65 (50%), Positives = 46/65 (70%)
Frame = -1
Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
G HFNPT ++HGAP E RH GDLGNI + G + + +N+ D+ + L G H+IIGR++VV
Sbjct: 60 GPHFNPTGKEHGAPQDENRHAGDLGNI-TAGADGVANVNVSDSQIPLTGAHSIIGRAVVV 118
Query: 268 HTDKE 254
H D +
Sbjct: 119 HADPD 123
Score = 47.2 bits (107), Expect = 8e-06
Identities = 40/109 (36%), Positives = 47/109 (43%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF*SHQ*GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHDGQ 321
GFHVH GDT+ C S F + N LG G A+ N D Q
Sbjct: 43 GFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQ 102
Query: 320 RYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGIIAI 174
+ S R A DLG H LSKTTGN+GGR+ CGII +
Sbjct: 103 IPLTGAHSIIGRAVVVHADPD-DLGKGGHELSKTTGNAGGRVACGIIGL 150
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 74.1 bits (174), Expect = 6e-14
Identities = 30/65 (46%), Positives = 48/65 (73%)
Frame = -1
Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
G H+NP ++HGAP+ E RH GDLGN+ + G + + I+++D+ + L GP++IIGR++VV
Sbjct: 178 GPHYNPAGKEHGAPEDETRHAGDLGNV-TAGEDGVANIHVVDSQIPLTGPNSIIGRAVVV 236
Query: 268 HTDKE 254
H D +
Sbjct: 237 HADPD 241
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = -3
Query: 254 DLGLTDHPLSKTTGNSGGRLGCGIIAI 174
DLG H LSKTTGN+GGR+ CGII +
Sbjct: 242 DLGKGGHELSKTTGNAGGRVACGIIGL 268
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTS 453
GFH+H GDT+ C S
Sbjct: 161 GFHIHALGDTTNGCMS 176
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 73.3 bits (172), Expect = 1e-13
Identities = 33/65 (50%), Positives = 46/65 (70%)
Frame = -1
Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
G HFNP N+ HGAP + RHVGDLGNI + + + +I + D +SL GPH+I+GR++VV
Sbjct: 70 GPHFNPHNKSHGAPSDDERHVGDLGNIVA-NKDGVADIFIKDLQISLSGPHSILGRAVVV 128
Query: 268 HTDKE 254
H D +
Sbjct: 129 HADSD 133
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTS 453
GFH+H +GDT+ C S
Sbjct: 53 GFHIHSFGDTTNGCNS 68
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/61 (47%), Positives = 41/61 (67%)
Frame = -1
Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
G HFNP N HGAP+ E+RH GDLGNI + + E ++D + L GP++++GR+ VV
Sbjct: 110 GPHFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVV 168
Query: 268 H 266
H
Sbjct: 169 H 169
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/109 (30%), Positives = 46/109 (42%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF*SHQ*GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHDGQ 321
GFH+HE+GDT+ C S F + LG A+ D Q
Sbjct: 93 GFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQ 152
Query: 320 RYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGIIAI 174
P+ + F + DLG H LS +TGN+GGRL CG++ +
Sbjct: 153 -IPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 200
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 37.9 bits (84), Expect = 0.005
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
A E F P + PDA + GD NI S ++ N++D ++ + G N S+V
Sbjct: 1098 AHERFEPRDNPSSTPDARVSEDGDNINIGSPDSENIMLQNVVDTIVDIVGLENEAIHSIV 1157
Query: 271 V-HTDKEIW 248
+ + EIW
Sbjct: 1158 IGAAESEIW 1166
>11_01_0762 + 6400052-6401845,6401977-6402609
Length = 808
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 404 IGSAVVLIGGIKMLTGLTCNRCSCRHIRA 490
+G +++ G+++L GLTC+ +C IRA
Sbjct: 341 VGCNELILQGLRILEGLTCDPHNCTDIRA 369
>09_02_0233 +
6113335-6113416,6113550-6113596,6114129-6114419,
6114651-6114668
Length = 145
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 406 DAEIRHVGDLGNIKSVGYNSLTEINMMDNVM 314
DA I HV DL IKS+G + L +I ++ V+
Sbjct: 106 DARINHVNDLDKIKSIG-DDLAKIKLIGLVV 135
>05_01_0067 +
467749-467851,467964-468010,468598-468846,469078-469095
Length = 138
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 406 DAEIRHVGDLGNIKSVGYNSLTEINMMDNVM 314
DA I HV DL IKS+G + L +I ++ V+
Sbjct: 99 DARINHVDDLDKIKSIG-DDLVKIKLIGLVV 128
>01_07_0145 + 41449629-41449698,41449785-41449873,41451842-41452255
Length = 190
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 370 CCPSRQHA*FQHRERRGPHW 429
CCPS + F R R PHW
Sbjct: 64 CCPSSSSSPFALRHPRHPHW 83
>01_05_0090 +
18038219-18038421,18039365-18039488,18040229-18040311,
18040401-18040473,18040584-18040688,18040803-18040853,
18041705-18041781,18041879-18042037,18043548-18043692,
18043776-18043884,18043959-18044107,18044175-18044258,
18044784-18044825,18045811-18046014
Length = 535
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 434 IKMLTGLTCNRCSCRHIRARESPCK 508
+K + LTC CSC R+R S C+
Sbjct: 43 LKFVLPLTCPPCSCCCFRSRYSDCR 67
>01_06_0581 - 30386018-30386440
Length = 140
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 322 CPSCLFRSANCSQPTLCCPS 381
CPSC +N S PTL CPS
Sbjct: 3 CPSCCL--SNHSAPTLLCPS 20
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,186
Number of Sequences: 37544
Number of extensions: 303080
Number of successful extensions: 751
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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