Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1226
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                73   1e-13
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                51   6e-07
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                44   1e-04
SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)                     31   0.41 
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         29   2.2  
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 29   2.9  
SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)                28   3.8  
SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)              28   5.1  
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)            27   6.7  
SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)                 27   8.9  
SB_50077| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_36960| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)                 27   8.9  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 32/66 (48%), Positives = 47/66 (71%)
 Frame = -1

Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
           AG HFNP  ++HG P  E RHVGDLGN+ + G +    I+M D +++L G H+++GRS+V
Sbjct: 59  AGPHFNPFKKEHGGPSDENRHVGDLGNVVA-GDDGKACIDMTDALVTLVGEHSVVGRSVV 117

Query: 271 VHTDKE 254
           VH D++
Sbjct: 118 VHADED 123



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = -3

Query: 254 DLGLTDHPLSKTTGNSGGRLGCGIIAI 174
           DLG   H  SKTTG++GGRL CG+I I
Sbjct: 124 DLGRGGHEDSKTTGHAGGRLACGVIGI 150


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 24/49 (48%), Positives = 37/49 (75%)
 Frame = -1

Query: 418 HGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
           HGAP+ + RH+GDLGNI++   N + ++++ D ++SL G  +IIGRSLV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = -3

Query: 254 DLGLTDHPLSKTTGNSGGRLGCGIIA 177
           DLG   H LSK+TGNSG R+GCGIIA
Sbjct: 43  DLGRGGHELSKSTGNSGARVGCGIIA 68



 Score = 33.9 bits (74), Expect = 0.077
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = -1

Query: 391 HVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKE 254
           HVGDLGNI +   N        D  + ++   +IIGR++VVH D++
Sbjct: 1   HVGDLGNIIA-NQNGRATFRFEDKTVKVW---DIIGRAIVVHADED 42


>SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)
          Length = 375

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 RCPSCLFRSAN-CSQPTLCCPSRQHA*FQHRERRGPHWWD 435
           RC  C  R  + C    L CPSR HA    R RR   +WD
Sbjct: 87  RCIPCGERGFSACRSGGLRCPSRSHAMRSMRTRRRARYWD 126


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 388 VGDL-GNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVHTDKEIWALPII 233
           VGDL G    +  N+++ +   D+ + L G H I GR+LV+ T     A  II
Sbjct: 142 VGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFGRTLVLKTSDVFKACAII 193


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 368  YVAQVANMPNFSIGSAVVLIGGIKMLTGLT 457
            YVA +A +P+ S+   V++ GG+ ++  +T
Sbjct: 1031 YVAMMAQLPSVSLTVPVIIFGGVAVVASVT 1060


>SB_40574| Best HMM Match : Dynein_light (HMM E-Value=0)
          Length = 89

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 40  QFSFEKQVTSFLKFSFEKQMTSSFDCVLHVEFYS 141
           +F+ EK + +F+K  F+K+   ++ C++   F S
Sbjct: 31  KFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGS 64


>SB_59679| Best HMM Match : Lectin_C (HMM E-Value=5.3e-10)
          Length = 849

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 268 HTDKEIWALPIIR*AKQPAILAAVWDA 188
           HTDK+ W   ++  AK+ AIL  + DA
Sbjct: 157 HTDKKTWMGGVVECAKEGAILTDISDA 183


>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
          Length = 1058

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -1

Query: 445 EHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVVH 266
           E F+   E +G PD  I       N++  GY + T I M    +  +GP     R++VV 
Sbjct: 159 ETFSQLIERYGFPDYIIH------NVQERGYTTPTPIQMQATPLMAHGPKKSGFRAVVVS 212

Query: 265 TDKEI 251
             +E+
Sbjct: 213 PTREL 217


>SB_6891| Best HMM Match : Bac_chlorC (HMM E-Value=3.7)
          Length = 433

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 RCPSCLFRSAN-CSQPTLCCPSRQHA*FQHRERRGPHWWD 435
           RC  C  R  + C    L C SR HA    R RR    WD
Sbjct: 71  RCALCDDRGFSACRSGGLRCASRSHAMRSMRTRRRARHWD 110


>SB_50077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 RCPSCLFRSAN-CSQPTLCCPSRQHA*FQHRERRGPHWWD 435
           RC  C  R  + C    L C SR HA    R RR    WD
Sbjct: 452 RCTLCDERGFSACRSGGLRCASRSHAMRSMRTRRRARHWD 491


>SB_36960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 RCPSCLFRSAN-CSQPTLCCPSRQHA*FQHRERRGPHWWD 435
           RC  C  R  + C    L C SR HA    R RR    WD
Sbjct: 19  RCTLCDERGFSACRSGGLRCASRSHAMRSMRTRRRARHWD 58


>SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)
          Length = 1255

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = +1

Query: 319 RCPSCLFRSAN-CSQPTLCCPSRQHA*FQHRERRGPHWWD 435
           RC  C  R  + C    L C SR HA    R RR    WD
Sbjct: 697 RCTLCDERGFSACRSGGLRCASRSHAMRSMRTRRRARHWD 736


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,672,909
Number of Sequences: 59808
Number of extensions: 362565
Number of successful extensions: 781
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)