Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1226
(508 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 81 6e-16
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 81 6e-16
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 81 6e-16
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 81 6e-16
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 77 7e-15
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 68 5e-12
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 68 5e-12
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 68 5e-12
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 29 1.5
AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans Phosphodieste... 29 2.6
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 29 2.6
U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical p... 28 4.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 5.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 5.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 5.9
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 80.6 bits (190), Expect = 6e-16
Identities = 32/66 (48%), Positives = 50/66 (75%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG HFNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+V
Sbjct: 60 AGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMV 118
Query: 271 VHTDKE 254
VH ++
Sbjct: 119 VHAGQD 124
Score = 33.5 bits (73), Expect = 0.090
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF--*SHQ*GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHD 327
GFHVH+YGD++ C S F G +S + LG + G + K
Sbjct: 44 GFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRH--VGDLGNVEAG-ADGVAKIKLT 100
Query: 326 GQRYVFIWPS*YYRKKFGRAHGQRDL--GLTDH-PLSKTTGNSGGRLGCGIIAI 174
P+ + GQ DL G+ D SK TGN+G R CG+IA+
Sbjct: 101 DTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 80.6 bits (190), Expect = 6e-16
Identities = 32/66 (48%), Positives = 50/66 (75%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG HFNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+V
Sbjct: 60 AGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMV 118
Query: 271 VHTDKE 254
VH ++
Sbjct: 119 VHAGQD 124
Score = 33.5 bits (73), Expect = 0.090
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF--*SHQ*GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHD 327
GFHVH+YGD++ C S F G +S + LG + G + K
Sbjct: 44 GFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRH--VGDLGNVEAG-ADGVAKIKLT 100
Query: 326 GQRYVFIWPS*YYRKKFGRAHGQRDL--GLTDH-PLSKTTGNSGGRLGCGIIAI 174
P+ + GQ DL G+ D SK TGN+G R CG+IA+
Sbjct: 101 DTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 80.6 bits (190), Expect = 6e-16
Identities = 32/66 (48%), Positives = 50/66 (75%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG HFNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+V
Sbjct: 60 AGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMV 118
Query: 271 VHTDKE 254
VH ++
Sbjct: 119 VHAGQD 124
Score = 33.5 bits (73), Expect = 0.090
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF--*SHQ*GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHD 327
GFHVH+YGD++ C S F G +S + LG + G + K
Sbjct: 44 GFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRH--VGDLGNVEAG-ADGVAKIKLT 100
Query: 326 GQRYVFIWPS*YYRKKFGRAHGQRDL--GLTDH-PLSKTTGNSGGRLGCGIIAI 174
P+ + GQ DL G+ D SK TGN+G R CG+IA+
Sbjct: 101 DTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 80.6 bits (190), Expect = 6e-16
Identities = 32/66 (48%), Positives = 50/66 (75%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG HFNP + HG P +EIRHVGDLGN+++ G + + +I + D +++LYGP+ ++GRS+V
Sbjct: 82 AGPHFNPFGKTHGGPKSEIRHVGDLGNVEA-GADGVAKIKLTDTLVTLYGPNTVVGRSMV 140
Query: 271 VHTDKE 254
VH ++
Sbjct: 141 VHAGQD 146
Score = 33.5 bits (73), Expect = 0.090
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF--*SHQ*GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHD 327
GFHVH+YGD++ C S F G +S + LG + G + K
Sbjct: 66 GFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRH--VGDLGNVEAG-ADGVAKIKLT 122
Query: 326 GQRYVFIWPS*YYRKKFGRAHGQRDL--GLTDH-PLSKTTGNSGGRLGCGIIAI 174
P+ + GQ DL G+ D SK TGN+G R CG+IA+
Sbjct: 123 DTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 77.0 bits (181), Expect = 7e-15
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG HFNP +HG D+ +RHVGDLGN+++ G + + +I D V+SL+G + +IGRS+V
Sbjct: 80 AGPHFNPCKMNHGGRDSVVRHVGDLGNVEA-GADGVAKIKFSDKVVSLFGANTVIGRSMV 138
Query: 271 VHTDKE 254
VH D++
Sbjct: 139 VHVDRD 144
Score = 32.3 bits (70), Expect = 0.21
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTS 453
GFH+H+YGD++ CTS
Sbjct: 64 GFHIHQYGDSTDGCTS 79
Score = 27.1 bits (57), Expect = 7.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 227 SKTTGNSGGRLGCGIIAI 174
S TGN+G R CG+IA+
Sbjct: 157 SLKTGNAGARAACGVIAL 174
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 67.7 bits (158), Expect = 5e-12
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG H+NP HGAPD RH+GDLGNI+S T I++ D++ SL G ++IIGRS+V
Sbjct: 84 AGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVV 142
Query: 271 VH 266
+H
Sbjct: 143 IH 144
Score = 33.9 bits (74), Expect = 0.068
Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF*SHQ*GPRRSRC*N*ACWRLGQHKVG-----WLQFADRN 336
GFH+HE GDT C S + H+ N LG + + +D
Sbjct: 68 GFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSL 127
Query: 335 KHDGQRYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGII 180
+Y I S +K DLG SKTTGN+G RL CG I
Sbjct: 128 ASLSGQYSIIGRSVVIHEKTD------DLGRGTSDQSKTTGNAGSRLACGTI 173
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 67.7 bits (158), Expect = 5e-12
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG H+NP HGAPD RH+GDLGNI+S T I++ D++ SL G ++IIGRS+V
Sbjct: 84 AGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVV 142
Query: 271 VH 266
+H
Sbjct: 143 IH 144
Score = 35.5 bits (78), Expect = 0.022
Identities = 35/114 (30%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF*SHQ*GPRRSRC*N*ACWRLGQHKVG-----WLQFADRN 336
GFH+HE GDT C S + H+ N LG + + +D
Sbjct: 68 GFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSL 127
Query: 335 KHDGQRYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGIIAI 174
+Y I S +K DLG SKTTGN+G RL CG I I
Sbjct: 128 ASLSGQYSIIGRSVVIHEKTD------DLGRGTSDQSKTTGNAGSRLACGTIGI 175
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 67.7 bits (158), Expect = 5e-12
Identities = 32/62 (51%), Positives = 43/62 (69%)
Frame = -1
Query: 451 AGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLV 272
AG H+NP HGAPD RH+GDLGNI+S T I++ D++ SL G ++IIGRS+V
Sbjct: 84 AGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVV 142
Query: 271 VH 266
+H
Sbjct: 143 IH 144
Score = 33.9 bits (74), Expect = 0.068
Identities = 34/112 (30%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
Frame = -3
Query: 500 GFHVHEYGDTSTDCTSGR*AF*SHQ*GPRRSRC*N*ACWRLGQHKVG-----WLQFADRN 336
GFH+HE GDT C S + H+ N LG + + +D
Sbjct: 68 GFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSL 127
Query: 335 KHDGQRYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGII 180
+Y I S +K DLG SKTTGN+G RL CG I
Sbjct: 128 ASLSGQYSIIGRSVVIHEKTD------DLGRGTSDQSKTTGNAGSRLACGTI 173
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 290 YRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCG 186
YR + GR +GQR G DH +GN GG G G
Sbjct: 570 YRGRGGRGNGQR-FGGRDHRYQGGSGNGGGGNGGG 603
>AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans
Phosphodiesterase protein 6, isoformb protein.
Length = 697
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 254 LFVRVHDQTSSYNIMRAI*RHNVVHHVYFGQRIVANRLYVAQVAN 388
L V + ++ S RA+ + N++HHV + R V YV ++AN
Sbjct: 177 LIVSIAEKHISEKRRRALAQSNIIHHVTWNTRDVVLFDYVGRLAN 221
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 254 LFVRVHDQTSSYNIMRAI*RHNVVHHVYFGQRIVANRLYVAQVAN 388
L V + ++ S RA+ + N++HHV + R V YV ++AN
Sbjct: 177 LIVSIAEKHISEKRRRALAQSNIIHHVTWNTRDVVLFDYVGRLAN 221
>U41105-12|AAA82406.1| 556|Caenorhabditis elegans Hypothetical
protein T02G5.12 protein.
Length = 556
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 352 NSLTEINMMDNVMSLYGPHNIIGR 281
N L++ N+ N++S+YG N IGR
Sbjct: 378 NILSDNNVSGNILSVYGTANTIGR 401
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -1
Query: 466 PIARQAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGP 299
PI QAG+ F GAP +R L N + V ++ EI DN+ SLY P
Sbjct: 8845 PITHQAGKSFTYKFNFMGAPAPRLR---VLSNGEPVSFDVKYEI--YDNIASLYIP 8895
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -1
Query: 466 PIARQAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGP 299
PI QAG+ F GAP +R L N + V ++ EI DN+ SLY P
Sbjct: 8865 PITHQAGKSFTYKFNFMGAPAPRLR---VLSNGEPVSFDVKYEI--YDNIASLYIP 8915
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 5.9
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -1
Query: 466 PIARQAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGP 299
PI QAG+ F GAP +R L N + V ++ EI DN+ SLY P
Sbjct: 8865 PITHQAGKSFTYKFNFMGAPAPRLR---VLSNGEPVSFDVKYEI--YDNIASLYIP 8915
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,179,890
Number of Sequences: 27780
Number of extensions: 258182
Number of successful extensions: 664
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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