Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1226
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 126 RRILLVKRVKTMTSFTYGNYSASQTAARIAGC 221
           + ++LVK+VK +    YG+   S T      C
Sbjct: 11  QNVVLVKKVKIVLLIFYGSIMFSMTQVNKEEC 42


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 89  SKLNLRNDVTCFSKLNWLYE*NST 18
           + +NL   + C S L+W    NST
Sbjct: 287 ASVNLICHILCMSDLHWQLPHNST 310


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 317 YVFIWPS*YYRKKFGRAHGQRDLGLT 240
           +V IW    +   F R +GQ  +GLT
Sbjct: 59  HVMIWIGFGFLMTFLRRYGQSAVGLT 84


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 292 IIGRSLVVHTDKEIWALPII 233
           I+ ++++ HT K +W  P I
Sbjct: 121 IMTKAILHHTGKVVWKPPAI 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,110
Number of Sequences: 438
Number of extensions: 3047
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)