Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1226
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    72   3e-13
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    69   2e-12
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...    66   1e-11
At1g34040.1 68414.m04220 alliinase family protein contains Pfam ...    32   0.26 
At2g47500.1 68415.m05929 kinesin motor protein-related                 29   1.8  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    29   1.8  
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    27   7.3  

>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 31/65 (47%), Positives = 44/65 (67%)
 Frame = -1

Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
           G HFNP N  HGAP+ E RH GDLGNI +   + + E  ++DN + L GP++++GR+ VV
Sbjct: 123 GPHFNPNNMTHGAPEDECRHAGDLGNI-NANADGVAETTIVDNQIPLTGPNSVVGRAFVV 181

Query: 268 HTDKE 254
           H  K+
Sbjct: 182 HELKD 186



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = -3

Query: 500 GFHVHEYGDTSTDCTSGR*AF*SHQ*--GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHD 327
           GFH+HE+GDT+  C S    F  +    G     C +     LG         A+    D
Sbjct: 106 GFHLHEFGDTTNGCISTGPHFNPNNMTHGAPEDECRH--AGDLGNINANADGVAETTIVD 163

Query: 326 GQRYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGIIAI 174
            Q      P+    + F     + DLG   H LS TTGN+GGRL CG+I +
Sbjct: 164 NQ-IPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 32/65 (49%), Positives = 43/65 (66%)
 Frame = -1

Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
           G HFNP N  HG P+ E RH GDLGNI + G N + EI + D  + L G ++I+GR++VV
Sbjct: 66  GPHFNPLNRVHGPPNEEERHAGDLGNILA-GSNGVAEILIKDKHIPLSGQYSILGRAVVV 124

Query: 268 HTDKE 254
           H D +
Sbjct: 125 HADPD 129



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = -3

Query: 254 DLGLTDHPLSKTTGNSGGRLGCGIIAI 174
           DLG   H LSK+TGN+G R+GCGII +
Sbjct: 130 DLGKGGHKLSKSTGNAGSRVGCGIIGL 156



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 500 GFHVHEYGDTSTDCTS 453
           GFH+H +GDT+  C S
Sbjct: 49  GFHIHSFGDTTNGCIS 64


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = -1

Query: 448 GEHFNPTNEDHGAPDAEIRHVGDLGNIKSVGYNSLTEINMMDNVMSLYGPHNIIGRSLVV 269
           G HFNP  + HGAP+   RH GDLGNI +VG +      + D  + L GP++I+GR++VV
Sbjct: 60  GPHFNPDGKTHGAPEDANRHAGDLGNI-TVGDDGTATFTITDCQIPLTGPNSIVGRAVVV 118

Query: 268 HTDKE 254
           H D +
Sbjct: 119 HADPD 123



 Score = 38.3 bits (85), Expect = 0.003
 Identities = 36/109 (33%), Positives = 42/109 (38%)
 Frame = -3

Query: 500 GFHVHEYGDTSTDCTSGR*AF*SHQ*GPRRSRC*N*ACWRLGQHKVGWLQFADRNKHDGQ 321
           GFHVH  GDT+  C S    F             N     LG   VG    A     D Q
Sbjct: 43  GFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQ 102

Query: 320 RYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGIIAI 174
                 P+    +         DLG   H LS  TGN+GGR+ CGII +
Sbjct: 103 -IPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150


>At1g34040.1 68414.m04220 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 457

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 329 DGQRYVFIWPS*YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGII 180
           DG    +I    YY   F     Q D  L+   LSKTTG++G R G  ++
Sbjct: 248 DGPNVKYIHDYAYYWPYFSPITRQADEDLSLFSLSKTTGHAGSRFGWALV 297


>At2g47500.1 68415.m05929 kinesin motor protein-related 
          Length = 974

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 282 EVWSCTRTKRSGPYRSSVEQNNRQFWRPFGMR 187
           E+  C    R+ P  S+  QNNR F +P G R
Sbjct: 270 ELEFCHAKVRAAPRESTSSQNNRSFLKPLGER 301


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 293 YYRKKFGRAHGQRDLGLTDHPLSKTTGNSGGRLGCGII 180
           YY   F       D  L+   LSKTTG++G R G G++
Sbjct: 262 YYWPHFSPITHPVDEDLSLFSLSKTTGHAGSRFGWGLV 299


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 387 TCLISASGAPWSSLVGLKCS 446
           T +ISA G  WS LV L CS
Sbjct: 273 TGIISARGRAWSDLVALGCS 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,366,624
Number of Sequences: 28952
Number of extensions: 235886
Number of successful extensions: 554
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)