Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1225
         (495 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   4.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   4.6  
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    21   8.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 431 WDGPTVSTPAF 463
           WD PT S PAF
Sbjct: 7   WDTPTSSAPAF 17


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 479 GLKDKKTPELKQSGHP 432
           G+KDK  P+ +  G+P
Sbjct: 628 GIKDKLYPDRRSMGYP 643


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 479 GLKDKKTPELKQSGHP 432
           G+KDK  P+ +  G+P
Sbjct: 627 GIKDKLYPDRRSMGYP 642


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 430 VGWPDCFNSGVFLSF 474
           +G P CFNS V+  F
Sbjct: 178 LGNPYCFNSSVYKVF 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,293
Number of Sequences: 336
Number of extensions: 2099
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11630247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)