BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--1225 (495 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 30 0.17 SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 27 1.6 SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 26 2.7 SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 2.7 SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 4.7 SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 6.3 SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 25 6.3 SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 25 6.3 SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 8.3 >SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual Length = 1489 Score = 30.3 bits (65), Expect = 0.17 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 153 PAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRTRL 263 P V + +P + D L A +++V+T+DVLD R +L Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGRLKL 1474 >SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc es pombe|chr 2|||Manual Length = 372 Score = 27.1 bits (57), Expect = 1.6 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = +2 Query: 302 FTKIHCWNLTQYEKCVFLDADIFGDSKI 385 FTK+ + + +Y++ FLD+DI K+ Sbjct: 157 FTKLRVFEMYEYDRICFLDSDILPIKKM 184 >SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 457 Score = 26.2 bits (55), Expect = 2.7 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +3 Query: 126 SLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 233 +LR+A + P V + TV+E +RD V + VVT Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT 147 >SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces pombe|chr 1|||Manual Length = 101 Score = 26.2 bits (55), Expect = 2.7 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -3 Query: 319 AVYLCEGDAELWPLEEGQVSRVLESRTSTVTTSEKTARRRSLIASL 182 A+Y + + PL+E + V S+T TV S+K+ S A L Sbjct: 24 ALYRVQRPLQRRPLQELSIELVKPSQTITVKKSKKSTNSSSYFAQL 69 >SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces pombe|chr 2|||Manual Length = 718 Score = 25.4 bits (53), Expect = 4.7 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = -1 Query: 438 PSHVGSSR*LFTLEEFIAILESPNI 364 P VGSS+ L + F+++ ++PNI Sbjct: 178 PESVGSSKSLKIFKNFLSLADTPNI 202 >SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 893 Score = 25.0 bits (52), Expect = 6.3 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -3 Query: 337 VLSEVPAVYLCEGDAELWPLEEGQVSRVLESRTSTVTTSEKTARRRSLIASLT 179 ++ E+PA+Y A W + E Q R R T S A +L L+ Sbjct: 171 IMIEIPALYFMSLTAFYWSVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223 >SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 376 Score = 25.0 bits (52), Expect = 6.3 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%) Frame = +3 Query: 72 VTLATN--DSYGLGALVLAHSLRR---AGSVYPAVALITPTVSEAMRDRLRAVFSEVVTV 236 +TL T+ D Y VL + L+ S YP L+ V E +RLR +E++ V Sbjct: 81 LTLPTSEHDVYFNATRVLVYKLKHHPETKSKYPVHVLVMKGVDEWKIERLRLDGAEIIMV 140 Query: 237 D 239 D Sbjct: 141 D 141 Score = 25.0 bits (52), Expect = 6.3 Identities = 9/22 (40%), Positives = 15/22 (68%) Frame = +2 Query: 302 FTKIHCWNLTQYEKCVFLDADI 367 FTK+ + TQ++K LD+D+ Sbjct: 166 FTKLSVFEQTQFDKVCILDSDL 187 >SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 25.0 bits (52), Expect = 6.3 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +3 Query: 90 DSYGLGALVLAHSLRRAGSVYPAVALI 170 +S G L L H+LR+ G+++P A + Sbjct: 312 NSTEFGWLALTHALRKKGAIFPIHAYL 338 >SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr 1|||Manual Length = 778 Score = 24.6 bits (51), Expect = 8.3 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 266 GEPRS*VQNVNRDYFGENCAKTIPHSF 186 GE S V + NR++ G N A H+F Sbjct: 459 GEKNSIVTSYNRNFTGRNDANPATHAF 485 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,932,317 Number of Sequences: 5004 Number of extensions: 36352 Number of successful extensions: 119 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 119 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 194131776 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -