Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1225
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      30   0.17 
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    27   1.6  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   2.7  
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    26   2.7  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   4.7  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   6.3  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    25   6.3  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   6.3  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   8.3  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 153  PAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRTRL 263
            P V + +P     + D L A +++V+T+DVLD R +L
Sbjct: 1438 PTVKVSSPRCELHLDDLLSAQYNKVLTLDVLDGRLKL 1474


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 302 FTKIHCWNLTQYEKCVFLDADIFGDSKI 385
           FTK+  + + +Y++  FLD+DI    K+
Sbjct: 157 FTKLRVFEMYEYDRICFLDSDILPIKKM 184


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 126 SLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 233
           +LR+A +  P V +   TV+E +RD    V + VVT
Sbjct: 112 NLRKALTSTPNVTVTEATVNELLRDETGEVITGVVT 147


>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 319 AVYLCEGDAELWPLEEGQVSRVLESRTSTVTTSEKTARRRSLIASL 182
           A+Y  +   +  PL+E  +  V  S+T TV  S+K+    S  A L
Sbjct: 24  ALYRVQRPLQRRPLQELSIELVKPSQTITVKKSKKSTNSSSYFAQL 69


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 438 PSHVGSSR*LFTLEEFIAILESPNI 364
           P  VGSS+ L   + F+++ ++PNI
Sbjct: 178 PESVGSSKSLKIFKNFLSLADTPNI 202


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -3

Query: 337 VLSEVPAVYLCEGDAELWPLEEGQVSRVLESRTSTVTTSEKTARRRSLIASLT 179
           ++ E+PA+Y     A  W + E Q  R    R  T   S   A   +L   L+
Sbjct: 171 IMIEIPALYFMSLTAFYWSVYEAQQKRPFSLRWHTSLLSTGVALGLALSTKLS 223


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = +3

Query: 72  VTLATN--DSYGLGALVLAHSLRR---AGSVYPAVALITPTVSEAMRDRLRAVFSEVVTV 236
           +TL T+  D Y     VL + L+      S YP   L+   V E   +RLR   +E++ V
Sbjct: 81  LTLPTSEHDVYFNATRVLVYKLKHHPETKSKYPVHVLVMKGVDEWKIERLRLDGAEIIMV 140

Query: 237 D 239
           D
Sbjct: 141 D 141



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 302 FTKIHCWNLTQYEKCVFLDADI 367
           FTK+  +  TQ++K   LD+D+
Sbjct: 166 FTKLSVFEQTQFDKVCILDSDL 187


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 90  DSYGLGALVLAHSLRRAGSVYPAVALI 170
           +S   G L L H+LR+ G+++P  A +
Sbjct: 312 NSTEFGWLALTHALRKKGAIFPIHAYL 338


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 266 GEPRS*VQNVNRDYFGENCAKTIPHSF 186
           GE  S V + NR++ G N A    H+F
Sbjct: 459 GEKNSIVTSYNRNFTGRNDANPATHAF 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,317
Number of Sequences: 5004
Number of extensions: 36352
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)