Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1225
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555 36 0.024
07_03_1743 - 29167078-29167290,29167389-29168159 35 0.041
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381... 33 0.17
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 33 0.17
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 32 0.22
02_05_0007 + 24918163-24918420,24919360-24919410,24919411-249194... 32 0.22
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 32 0.22
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 30 0.89
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 30 0.89
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 30 1.2
10_08_0883 + 21279913-21280235,21281066-21281327,21281998-212821... 29 1.6
04_04_0739 - 27693768-27694305,27694765-27694912,27694987-276951... 29 1.6
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223 28 4.7
06_02_0308 + 14124373-14124706,14124888-14124910 28 4.7
01_05_0513 - 22864657-22867899 28 4.7
>03_01_0598 + 4410722-4410988,4411112-4411745,4414612-4415555
Length = 614
Score = 35.5 bits (78), Expect = 0.024
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +3
Query: 78 LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSE 188
L ++D+Y GA+VLA S+RRAGS V L TVS+
Sbjct: 330 LHSSDTYLCGAIVLAQSIRRAGSTRDLVLLHDHTVSK 366
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 302 FTKIHCWNLTQYEKCVFLDADI 367
++K W LT Y++ VF+DADI
Sbjct: 400 YSKFRLWQLTDYDRVVFVDADI 421
>07_03_1743 - 29167078-29167290,29167389-29168159
Length = 327
Score = 34.7 bits (76), Expect = 0.041
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 63 RAWVT-LATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRL 206
RA+VT LA + Y G + LA LRR S YP V + P V R +L
Sbjct: 18 RAYVTFLAGDGDYWKGVVGLAKGLRRVRSAYPLVVAVLPDVPGEHRRKL 66
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 296 ITFTKIHCWNLTQYEKCVFLDADI 367
I ++K+ W +YE+ V+LDADI
Sbjct: 95 INYSKLRIWEFVEYERMVYLDADI 118
>03_02_0800 +
11337206-11337532,11337634-11337957,11338060-11338194,
11338280-11338519
Length = 341
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 296 ITFTKIHCWNLTQYEKCVFLDADI 367
I ++K+ W +YE+ V+LDADI
Sbjct: 100 INYSKLRIWEFVEYERMVYLDADI 123
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +2
Query: 302 FTKIHCWNLTQYEKCVFLDADI 367
++K W+LT+Y++ VFLDAD+
Sbjct: 398 YSKFWLWSLTEYDRVVFLDADL 419
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 32.3 bits (70), Expect = 0.22
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 302 FTKIHCWNLTQYEKCVFLDADI 367
++K W LT Y+K +F+DAD+
Sbjct: 423 YSKFRLWQLTDYDKIIFIDADL 444
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRA 212
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S+ R L A
Sbjct: 348 AYATILHSASEYVCGAISAAQSIRQAGSTRDLVILVDDTISDHHRKGLEA 397
>02_05_0007 +
24918163-24918420,24919360-24919410,24919411-24919480,
24919645-24919830,24920127-24920275,24921310-24921417,
24921501-24921638,24922574-24922853,24922924-24923047,
24923197-24923312,24923612-24923619
Length = 495
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 60 NRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRA 212
+ A+VTL D + LG VL S+R + V L++ VSE R L A
Sbjct: 37 DEAYVTLLYGDEFVLGVRVLGKSIRDTDTSRDLVVLVSDGVSEYSRKLLEA 87
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 302 FTKIHCWNLTQYEKCVFLDAD 364
+TK+ +N+T Y+K +LDAD
Sbjct: 113 YTKLKIFNMTSYKKVAYLDAD 133
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 32.3 bits (70), Expect = 0.22
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 302 FTKIHCWNLTQYEKCVFLDADI 367
++K W LT Y+K +F+DAD+
Sbjct: 398 YSKFRLWQLTDYDKIIFIDADL 419
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 AWVTLATNDS-YGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRA 212
A+ T+ + S Y GA+ A S+R+AGS V L+ T+S R L A
Sbjct: 323 AYATILHSASEYVCGAITAAQSIRQAGSTRDFVILVDETISNHHRKGLEA 372
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 30.3 bits (65), Expect = 0.89
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 302 FTKIHCWNLTQYEKCVFLDAD 364
+TK+ +N+T Y K V+LDAD
Sbjct: 109 YTKLKIFNMTSYRKVVYLDAD 129
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 30.3 bits (65), Expect = 0.89
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +3
Query: 18 LELSHETTPGFIMSNR-AWVTLATNDSYGLGALVLAHSLRRAGSV-YPAVALITPTV-SE 188
+ L+H TTP + NR + +A+N LGA H LR A +V P ++L T SE
Sbjct: 299 VHLTHLTTPESVFHNRLGFAAVASNP---LGAAASGHLLRAASAVASPLLSLFASTFRSE 355
Query: 189 AMR-DRL 206
A R D+L
Sbjct: 356 ANRLDKL 362
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 403 REELSAAPDV--GWPDCFNSGVFLSFKP 480
+++ SAAP WP FN+G FL+F P
Sbjct: 445 KKKTSAAPSAVASWPIVFNAGPFLAFSP 472
>10_08_0883 +
21279913-21280235,21281066-21281327,21281998-21282199,
21282289-21282436,21282541-21283084
Length = 492
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 296 ITFTKIHCWNLTQYEKCVFLDAD 364
+T K++ W L YE+ V +D+D
Sbjct: 139 LTLNKLYAWTLVDYERVVMIDSD 161
>04_04_0739 -
27693768-27694305,27694765-27694912,27694987-27695188,
27695802-27695864,27695865-27696120,27697811-27697953
Length = 449
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 296 ITFTKIHCWNLTQYEKCVFLDAD 364
+T K++ W+L Y++ V LD+D
Sbjct: 77 LTLNKLYAWSLVSYDRVVMLDSD 99
>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
Length = 254
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 241 TSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWASTRAPKP 98
T+ T + ARR+ L + + S + T PA+RS ST P P
Sbjct: 184 TAAATATATAARRKRLRHAHAMASTSDSDNSTSPAKRSFTPSTPPPPP 231
>06_02_0308 + 14124373-14124706,14124888-14124910
Length = 118
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 108 ALVLAHSLRRAGSVYPAVALITPTVSEA-MRDRLRAVF 218
+LVL L+ G + VA + P +SEA +R R +A+F
Sbjct: 25 SLVLLQQLQLLGVLVVVVAGVAPGISEAQVRSRFKAIF 62
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 147 PSRRGGANGPAPELPSRRSRLWPELP 70
P GG N P PE+P R P++P
Sbjct: 172 PEGGGGDNAPPPEVPPEAPRDLPDIP 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,061
Number of Sequences: 37544
Number of extensions: 263056
Number of successful extensions: 895
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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