Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1225
(495 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004) 70 9e-13
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 52 3e-07
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09) 48 3e-06
SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13) 41 6e-04
SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15) 36 0.014
SB_32366| Best HMM Match : Kinesin (HMM E-Value=0) 33 0.17
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16) 31 0.69
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067) 29 1.6
SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4) 27 6.4
SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13) 27 6.4
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45) 27 6.4
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45) 27 8.5
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 27 8.5
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08) 27 8.5
>SB_47587| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.004)
Length = 114
Score = 70.1 bits (164), Expect = 9e-13
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = +2
Query: 260 AHLALLQRPELGITFTKIHCWNLTQYEKCVFLDADI 367
A+LALL RPELGITFTKI CWNLT Y+KCVF+DAD+
Sbjct: 23 ANLALLSRPELGITFTKIRCWNLTHYQKCVFMDADM 58
Score = 64.1 bits (149), Expect = 6e-11
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = +1
Query: 379 QNCDELFEREELSAAPDVGWPDCFNSGVFLSFKP 480
QNCDELF+R ELSA PD+GWPDCFNSG+F+ F+P
Sbjct: 62 QNCDELFDRCELSAVPDIGWPDCFNSGMFV-FEP 94
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 57 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 233
S AWVTL D Y GAL +A SLR + Y V ++TP V+ R L ++ V+
Sbjct: 257 SRCAWVTLVMLGDGYAAGALAVAQSLRMVQTKYDLVCMVTPDVTHPTRRHLCVMYDHVIE 316
Query: 234 VDVLDSRTRLTW 269
V + R R W
Sbjct: 317 VPYIQHRCRKLW 328
Score = 34.7 bits (76), Expect = 0.042
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 299 TFTKIHCWNLTQYEKCVFLDADI 367
+FTK +C NL QYE+ +F+DAD+
Sbjct: 343 SFTKWNCLNLVQYERVMFIDADM 365
>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 90 DSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLDSRTRL 263
D Y GAL +AHSLR + + V ++TP V+ R LR V+ +V+ V + + RL
Sbjct: 4 DGYAAGALAVAHSLRMVQTKHDLVCMVTPDVTNPTRRHLRVVYDDVIEVPYIRQKCRL 61
Score = 34.7 bits (76), Expect = 0.042
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 299 TFTKIHCWNLTQYEKCVFLDADI 367
+FTK +C NL QYE+ +F+DAD+
Sbjct: 78 SFTKWNCLNLVQYERVMFIDADM 100
>SB_1969| Best HMM Match : Glyco_transf_8 (HMM E-Value=6.3e-09)
Length = 347
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +3
Query: 57 SNRAWVTLAT-NDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 233
S AWVTL D Y GAL +AHSLRR + + V ++TP V+ + L V+ V+
Sbjct: 45 SRYAWVTLVMCGDGYAAGALAVAHSLRRVETRHDLVYMVTPDVTHSTYRHLCVVYDHVIE 104
Query: 234 VDVLDSRTR 260
V + R
Sbjct: 105 VQYIQHPCR 113
>SB_16471| Best HMM Match : Glyco_transf_8 (HMM E-Value=5.5e-13)
Length = 310
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 66 AWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVL 245
AW+T ND + L ALVL +SL++ +A ++ V+ R+ LR V EV + L
Sbjct: 91 AWLTALVNDDFALPALVLGYSLQKFSCQKNMIAFVSEDVTSQTREALRKVGWEVQQHERL 150
Query: 246 D 248
D
Sbjct: 151 D 151
Score = 31.9 bits (69), Expect = 0.30
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 299 TFTKIHCWNLTQYEKCVFLDAD 364
T T+ H W TQ+ K V+LD D
Sbjct: 171 THTRFHAWGFTQFSKIVYLDPD 192
>SB_22899| Best HMM Match : Glyco_transf_8 (HMM E-Value=9.5e-15)
Length = 847
Score = 36.3 bits (80), Expect = 0.014
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 69 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDVLD 248
W++ ND Y + A+VL HS++ V + L++ VS+A L V V +D
Sbjct: 161 WLSALVNDEYVIPAVVLGHSIKTLSCVKKMLVLVSDEVSKASIHALERTGWSVKLVTAMD 220
Query: 249 SR 254
R
Sbjct: 221 CR 222
Score = 33.1 bits (72), Expect = 0.13
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 299 TFTKIHCWNLTQYEKCVFLDAD 364
T T+ H WN TQY K ++ D D
Sbjct: 240 THTRFHAWNYTQYSKIIYADPD 261
>SB_32366| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 1492
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 299 TFTKIHCWNLTQYEKCVFLDADI 367
T T+ H WN T Y K ++ D DI
Sbjct: 1169 THTRFHAWNYTHYRKIIYADPDI 1191
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +3
Query: 69 WVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVTVDV 242
W+++ ND Y + A+VL H++R V ++ VS++ + L + V+ +V
Sbjct: 1069 WLSVLVNDEYVIPAVVLGHTIRVFSCVKTMTVFVSNEVSKSGQKALEKTMTVFVSNEV 1126
>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
Length = 491
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -2
Query: 221 GENCAK--TIPHSFTDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQSYPCSI 60
G C K +I G+C++ Y + + G + +G Q GV G S CS+
Sbjct: 134 GTRCFKDSSIKDVCIQGKCEKSYLNIQQVGCDDVLGSGQRVDRCGVCNGDSSTCSV 189
>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 755
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -3
Query: 283 PLEEGQVSRVLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWAST 113
PL+ +R STV TS KT+ R L + T S+++ T AR +E +T
Sbjct: 250 PLQNNFFFAAKTTRFSTVKTSTKTSTRAGLTKAATTSPNSSSSLSTGKARTTEATTT 306
>SB_51493| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00067)
Length = 1873
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = -3
Query: 250 ESRTSTVTTSEKTA-RRRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 98
+ RT+ TT KT+ +RR I T +S P+ S WA T PKP
Sbjct: 1748 KGRTTRTTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1803
>SB_50229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = -3
Query: 250 ESRTSTVTTSEKTA-RRRSLIASLTVGVMSATAGYTEPAR----RSEWASTRAPKP 98
+ RT+ TT KT+ +RR I T +S P+ S WA T PKP
Sbjct: 1534 KGRTTRTTTRSKTSTKRRGPITETTTHTVSTQQRGASPSSPTSASSNWAGTGVPKP 1589
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 28.3 bits (60), Expect = 3.7
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Frame = -3
Query: 460 RRS*NS-RAIPRREQPIAL-HARRVHRNFGITKYIGI*EYAFLVLSEVPAVYLCEGD--A 293
RRS N+ R+ RR H RR +T+ + A +V + + +G
Sbjct: 602 RRSSNTTRSHTRRSSHTTRGHTRRSSNTTRVTQGDQETQLAVTQGGQVTQLAVTQGGQVT 661
Query: 292 ELWPLEEGQVSRVLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWAST 113
+L + GQV+++ ++ VTT T R + SLT + T G+T + + + T
Sbjct: 662 QLAVTQGGQVTQLAVTQDCQVTTRSHTRRSSNTTRSLTRRSSNTTRGHTRRSSNTTRSHT 721
Query: 112 R 110
R
Sbjct: 722 R 722
>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 71 GNSGHKRLLRLGSSGAGPFAPPRRLGVP 154
G SGHK +L L G PP RL P
Sbjct: 916 GGSGHKVVLHLDCDRDGARQPPERLSSP 943
>SB_47787| Best HMM Match : DUF1556 (HMM E-Value=3.4)
Length = 382
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 265 VSRVLESRTSTVTTSEKTARRRSLIASLTVGVMSATAGYTEPARRSEWAST 113
+S+ + TS +TTS + RR ++L + +S + T P R ++A +
Sbjct: 138 ISKGYNTTTSGLTTSRLSGRRSQSFSNLNLSSVSNSHTSTRPYRPEDYADS 188
>SB_33848| Best HMM Match : RasGEF_N (HMM E-Value=2.3e-13)
Length = 899
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 247 SRTSTVTTSEKTARRRSLIASLTVGVMSATAG 152
+ V TS K +RRRS I+ +ATAG
Sbjct: 688 TNAGVVVTSSKPSRRRSSISQAAAAFAAATAG 719
>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
Length = 638
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 185 TDGRCDECYGRVHRAGAAERMGQHQSSQAVGVVCGQS 75
T G C +CYGR G + G +AVGV+ QS
Sbjct: 491 TQGICAKCYGRNLATGKMTQKG-----EAVGVIAAQS 522
>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
Length = 443
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -2
Query: 233 RDYFGENC-AKTIPHSFTDGR--CD-ECYGRVHRAG 138
RDY+G NC IP T G CD + GRV R G
Sbjct: 11 RDYYGPNCTTHCIPRDGTSGHYTCDLKTGGRVCRPG 46
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = -2
Query: 233 RDYFGENCAKTIPHSFTDGRCDECYGRVHRAGA----AERMGQHQSSQAVGVVC 84
RD G K +P C EC G AG+ A R GQH A +C
Sbjct: 58 RDSLGRGVVKQVPEMSEGYSCKEC-GECVTAGSMAVYASRAGQHTCWHASCFIC 110
>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
Length = 469
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 296 ITFTKIHCWNLTQYEKCVFLDADIFGDSKIAMNSSSVKSYRLL 424
I + W L + +K VFLD D+ + ++ S+ S R L
Sbjct: 30 IVVVVVAVWRLRKSKKTVFLDLDVISITPKRLHRRSIHSSRTL 72
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,158
Number of Sequences: 59808
Number of extensions: 290535
Number of successful extensions: 851
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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