Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1225
         (495 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p pro...    87   2e-17
AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB...    87   2e-17

>AY121654-1|AAM51981.1|  333|Drosophila melanogaster RE02181p
           protein.
          Length = 333

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/67 (61%), Positives = 52/67 (77%)
 Frame = +3

Query: 54  MSNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 233
           MS  AWVTL TND+Y LGALVLAHSL+RA + +    L+TP VS+AMRDRL+ V++ V  
Sbjct: 1   MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDRLKEVYNVVQE 60

Query: 234 VDVLDSR 254
           V+VLDS+
Sbjct: 61  VNVLDSQ 67



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 251 KNAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDAD 364
           ++AA+LALL RPELG+TFTK+HCW L Q+EKCVFLDAD
Sbjct: 67  QDAANLALLSRPELGVTFTKLHCWRLVQFEKCVFLDAD 104



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +1

Query: 379 QNCDELFEREELSAAPDVGWPDCFNSGVFLSFKP 480
           QNCDELFEREELSAAPDV WPDCFNSGVF+ FKP
Sbjct: 109 QNCDELFEREELSAAPDVSWPDCFNSGVFV-FKP 141


>AE013599-3158|AAF46696.3|  333|Drosophila melanogaster CG9480-PB,
           isoform B protein.
          Length = 333

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/67 (61%), Positives = 52/67 (77%)
 Frame = +3

Query: 54  MSNRAWVTLATNDSYGLGALVLAHSLRRAGSVYPAVALITPTVSEAMRDRLRAVFSEVVT 233
           MS  AWVTL TND+Y LGALVLAHSL+RA + +    L+TP VS+AMRDRL+ V++ V  
Sbjct: 1   MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDRLKEVYNVVQE 60

Query: 234 VDVLDSR 254
           V+VLDS+
Sbjct: 61  VNVLDSQ 67



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 251 KNAAHLALLQRPELGITFTKIHCWNLTQYEKCVFLDAD 364
           ++AA+LALL RPELG+TFTK+HCW L Q+EKCVFLDAD
Sbjct: 67  QDAANLALLSRPELGVTFTKLHCWRLVQFEKCVFLDAD 104



 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +1

Query: 379 QNCDELFEREELSAAPDVGWPDCFNSGVFLSFKP 480
           QNCDELFEREELSAAPDV WPDCFNSGVF+ FKP
Sbjct: 109 QNCDELFEREELSAAPDVSWPDCFNSGVFV-FKP 141


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,747,105
Number of Sequences: 53049
Number of extensions: 433860
Number of successful extensions: 1270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)