Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1224
         (349 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.22 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   2.7  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    20   8.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    20   8.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.22
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 328 LPSNKCGSRNRSTTSLAPPLYTGSALNAPRVSCLQ 224
           LP+++C SR  S + + P   +G ++ + R + L+
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGESMLSERAALLR 113


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 343 PQPPSLPSNKCGSRNRSTTSLAPPLY 266
           P PP  P  +  +    T S  PPLY
Sbjct: 731 PPPPPPPRVESFAETVRTVSKIPPLY 756


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 305 SKQEYDESGPSIVHRKCS 252
           S   +D   P+I H  CS
Sbjct: 3   SSDHFDRESPNIDHNSCS 20


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 265 CTMEGPDSSYSCFEIHIC 318
           C   GP  S  CF   IC
Sbjct: 45  CVSCGPGQSGQCFGPSIC 62


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 295 STTSLAPPLYTGSALNAPRVSCLQQPAAGCSIQACN 188
           S+ +++P   T S +N+  +SC+  P+  CS Q  +
Sbjct: 16  SSNAMSPMTPTYS-MNS--MSCVSMPSMNCSPQGAS 48


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,508
Number of Sequences: 336
Number of extensions: 1297
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6876025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)