Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1224
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    60   7e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    36   0.001
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    36   0.001
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   2.5  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    25   4.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   4.4  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    24   7.8  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        24   7.8  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 60.5 bits (140), Expect = 7e-11
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWISKQEYDESGP IV+RKC
Sbjct: 347 ASLSTFQQMWISKQEYDESGPGIVYRKC 374


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESG 279
           ASL  FQ +W+SKQEYDE G
Sbjct: 399 ASLDNFQHLWVSKQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGP---SIVHRKC 255
           +SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 402 SSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 225 WRQLTRGAFRALPVYNG 275
           WR L +  F+ LPVY G
Sbjct: 404 WRTLAKDLFKLLPVYTG 420


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 343 PQPPSLPSNKCGSRNRSTTSLAPP 272
           P PPS+PS++   R  S ++ APP
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPP 254


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRK 258
           ASLSTF+++ I+ +EY      I  R+
Sbjct: 352 ASLSTFRRLLITSEEYKNDQNVIFRRR 378


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 332  LSTFQQMWISKQEYDESGPSIV 267
            L  + + W  KQ++DES  S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 322 SNKCGSRNRSTTSLAPPLYTGSALNAPRVSC 230
           +N+C S   +  +L   LY    LN P +SC
Sbjct: 84  NNRCLSDKENLENLQNLLYLHCDLNRPHLSC 114


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 191 TSLN*ASGRGLLEAADARCV*STSCVQWRGQTRRTPVSRSTFVGR 325
           T L+ A+G+G L      C  +   ++ +    +TP+ R+  VG+
Sbjct: 109 TCLHYAAGKGRLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGK 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,286
Number of Sequences: 5004
Number of extensions: 19825
Number of successful extensions: 50
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)