Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1224
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 62 2e-10
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 61 2e-10
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 61 2e-10
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 61 3e-10
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 61 3e-10
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 58 2e-09
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 58 2e-09
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 58 3e-09
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 48 3e-06
12_02_1282 + 27528159-27529148,27529549-27529614 46 6e-06
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 36 0.007
04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631... 30 0.57
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512... 29 0.76
09_03_0046 + 11862923-11863112,11863225-11863406,11863522-118636... 28 1.8
07_03_0288 + 16285485-16285721,16285811-16286184,16286499-162868... 28 2.3
09_04_0747 + 19892090-19893304,19893471-19893602,19894168-198942... 26 7.1
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 26 7.1
07_01_0069 + 505291-505327,505726-505956,506317-506652,507025-50... 26 7.1
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 26 7.1
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 26 9.3
07_03_1740 - 29153551-29153964 26 9.3
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 61.7 bits (143), Expect = 2e-10
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDESGPSIVHRKC
Sbjct: 346 ASLSTFQQMWISKGEYDESGPSIVHRKC 373
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 61.3 bits (142), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDESGP+IVHRKC
Sbjct: 349 ASLSTFQQMWISKDEYDESGPAIVHRKC 376
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 61.3 bits (142), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDESGP+IVHRKC
Sbjct: 349 ASLSTFQQMWISKDEYDESGPAIVHRKC 376
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 60.9 bits (141), Expect = 3e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDESGP+IVHRKC
Sbjct: 352 ASLSTFQQMWISKAEYDESGPAIVHRKC 379
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 60.9 bits (141), Expect = 3e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWI+K EYDESGPSIVHRKC
Sbjct: 349 ASLSTFQQMWIAKAEYDESGPSIVHRKC 376
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 58.0 bits (134), Expect = 2e-09
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWIS+ EY+ESGP+IVHRKC
Sbjct: 349 ASLSTFQQMWISRAEYEESGPAIVHRKC 376
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 58.0 bits (134), Expect = 2e-09
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDESGP IVH KC
Sbjct: 348 ASLSTFQQMWISKAEYDESGPGIVHMKC 375
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 57.6 bits (133), Expect = 3e-09
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDESGP IVH KC
Sbjct: 348 ASLSTFQQMWISKGEYDESGPGIVHMKC 375
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 47.6 bits (108), Expect = 3e-06
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -3
Query: 317 QMWISKQEYDESGPSIVHRKC 255
QMWISK EYDESGP+IVHRKC
Sbjct: 370 QMWISKGEYDESGPAIVHRKC 390
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 46.4 bits (105), Expect = 6e-06
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = -3
Query: 317 QMWISKQEYDESGPSIVHRKC 255
+MWI+K EYDESGPSIVHRKC
Sbjct: 330 KMWIAKAEYDESGPSIVHRKC 350
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 36.3 bits (80), Expect = 0.007
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3
Query: 320 QQMWISKQEYDESGPSIVHRKC 255
Q ++K +YDE+GPSIVH+KC
Sbjct: 376 QNQHVTKGDYDETGPSIVHKKC 397
>04_03_0926 -
20861383-20862198,20862359-20862430,20862938-20863123,
20863214-20863304,20863698-20863852,20864501-20864579,
20866797-20867263
Length = 621
Score = 29.9 bits (64), Expect = 0.57
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 310 GSRNRSTTSLAPPLYTGSALNAPRVSCLQQ--PAAGCS 203
GS++ S SLAPP+ T +AP V C++ P A CS
Sbjct: 577 GSKDDSVLSLAPPVQTSQ--HAPLVDCIRTRWPRAVCS 612
>07_03_0463 -
18449908-18450171,18450718-18450810,18451170-18451254,
18451607-18451705,18452099-18452238,18453036-18453482
Length = 375
Score = 29.5 bits (63), Expect = 0.76
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 150 ITIISYVQLN*RRLQA*IEHPAAGCWRQLTRGAFRA 257
+T + +V L RLQ +E PAA CWR L GA R+
Sbjct: 245 LTFVPFVVL---RLQKFLESPAATCWRALV-GAVRS 276
>09_03_0046 +
11862923-11863112,11863225-11863406,11863522-11863634,
11863894-11864140,11864333-11864452,11864601-11864604,
11864800-11864846,11864992-11865068,11865381-11865431,
11865519-11865567,11865694-11865718,11866226-11866344
Length = 407
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 271 LYTGSALNAPRVSCLQQPAAGCSI 200
L TG++ PRVSCL P+ C++
Sbjct: 102 LGTGTSEGIPRVSCLTNPSKTCTV 125
>07_03_0288 +
16285485-16285721,16285811-16286184,16286499-16286892,
16286917-16287806,16291189-16291446,16291518-16291628,
16291697-16291775,16291880-16291972,16292095-16292280
Length = 873
Score = 27.9 bits (59), Expect = 2.3
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -1
Query: 349 SDPQPPSLPSNKCGSRNRSTTSLAPPLYTGSALNAPRVSCLQQPAA 212
SDP P K GS N + PP LNAPR S + AA
Sbjct: 51 SDPHPSPAKKRKGGSDNEVDSDYVPP---EPVLNAPRRSKRKDQAA 93
>09_04_0747 +
19892090-19893304,19893471-19893602,19894168-19894215,
19894697-19894766,19894936-19894963,19896021-19896519
Length = 663
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 217 RAAGGS*RAVRLEHFLCTMEGPDSSYSCFEIHICWKVEREAE 342
+ AG RA R+ + E SYS H CW E+EAE
Sbjct: 533 KRAGADVRAKRMT--VSAAEATGCSYSQRRRHCCWWHEQEAE 572
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 338 ASLSTFQQMWISKQE 294
ASL +FQQMW SK +
Sbjct: 455 ASLGSFQQMWFSKAD 469
>07_01_0069 +
505291-505327,505726-505956,506317-506652,507025-507372,
507735-508594,508902-508971,509157-509371,509477-509537,
509606-509715,510644-510694,510794-510916
Length = 813
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -1
Query: 334 PSLPSNKCGSRNRSTTSLAPPLYTGSALNAPRVSCLQQPAAGCSIQ 197
P N C S +TTS AP AL A +V + PAA S++
Sbjct: 52 PDESGNGCTSGEGATTSTAP------ALEAEKVDKREAPAASASVE 91
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 337 PPSLPSNKCGSRNRSTTSLAPPLYTGSALNAPRV 236
PPSL SN ++ R P+ S LN P+V
Sbjct: 664 PPSLLSNIQAAQKRPVAQPKQPVSNSSRLNQPKV 697
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Frame = -1
Query: 349 SDPQPPSLPSNKCGSRNRST------TSLAPPL 269
SDP PP LP K G R + + L+PPL
Sbjct: 122 SDPPPPGLPPRKGGHRRSQSDIPFGFSHLSPPL 154
>07_03_1740 - 29153551-29153964
Length = 137
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 343 PQPPSLPSNKCGSRNRSTTSLAPPL 269
P PP P C S S T+ APP+
Sbjct: 84 PPPPPPPPAYCASYAASATAAAPPV 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,070,291
Number of Sequences: 37544
Number of extensions: 155209
Number of successful extensions: 481
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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