Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1224
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   2e-11
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   2e-11
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          64   2e-11
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       64   2e-11
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   5e-11
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   5e-11
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                 55   2e-08
SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   0.45 
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      30   0.59 
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             26   9.7  

>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 347 ASLSTFQQMWISKQEYDESGPSIVHRKC 374


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 347 ASLSTFQQMWISKQEYDESGPSIVHRKC 374


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWISKQEYDESGP+IVHRKC
Sbjct: 310 ASLSTFQQMWISKQEYDESGPAIVHRKC 337


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 27/28 (96%), Positives = 28/28 (100%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWISKQEYDESGP+IVHRKC
Sbjct: 321 ASLSTFQQMWISKQEYDESGPAIVHRKC 348


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = -3

Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
           ASLSTFQQMWI+K+EY E GP IVHRKC
Sbjct: 121 ASLSTFQQMWIAKEEYHEYGPPIVHRKC 148


>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 30.3 bits (65), Expect = 0.45
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +3

Query: 231 QLTRGAFRALPVYNGGARLVVLLFRDPHLLEGREGG 338
           +L+RG++  +P Y+GGA + +L    PH LEG   G
Sbjct: 398 KLSRGSYTYIPRYSGGADIDILASPLPH-LEGEAQG 432


>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 325  PSNKCGSRNRSTTSLAPPLYTGSALNAPRV--SCLQQPAAGC 206
            P N+ G++ R   +L  P++TGS L   R        P+A C
Sbjct: 879  PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 340 QPPSLPSNKCGSRNRSTTSLAPPLYTGSALNAPRVSCLQQ 221
           QP  +P +     N+  + L P L TGS  + P V+C  Q
Sbjct: 704 QPTDIPQH-----NQQASFLYPQLITGSGADVPGVACASQ 738


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 343 PQPPSLPSNKCGSRNRSTTSLAPPLY 266
           P PP  PSNK    +R+T  ++ P Y
Sbjct: 825 PPPPEEPSNKSRVIDRTTVPMSRPPY 850


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,073,536
Number of Sequences: 59808
Number of extensions: 175705
Number of successful extensions: 458
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)