Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1224
(349 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 64 2e-11
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 64 2e-11
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 64 2e-11
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 64 2e-11
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 64 2e-11
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 64 2e-11
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 64 2e-11
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 64 2e-11
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 64 2e-11
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 64 2e-11
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 64 2e-11
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 51 3e-07
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 38 0.001
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 36 0.006
AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 27 4.9
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 26 6.4
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 26 6.4
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 26 6.4
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 26 8.5
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 26 8.5
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 347 ASLSTFQQMWISKQEYDESGPSIVHRKC 374
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 347 ASLSTFQQMWISKQEYDESGPSIVHRKC 374
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 304 ASLSTFQQMWISKQEYDESGPSIVHRKC 331
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 334 ASLSTFQQMWISKQEYDESGPSIVHRKC 361
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 64.5 bits (150), Expect = 2e-11
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISKQEYDESGPSIVHRKC
Sbjct: 348 ASLSTFQQMWISKQEYDESGPSIVHRKC 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 50.8 bits (116), Expect = 3e-07
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -3
Query: 335 SLSTFQQMWISKQEYDESGPSIVHRKC 255
SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 409 SLGTFQQMWVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRK 258
ASL TF++MW+ K+EY++ G S +H++
Sbjct: 346 ASLDTFRKMWLGKKEYEDMGASAMHKR 372
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -3
Query: 344 SSASLSTFQQMWISKQEYDESGPSIVHRKCSKRTARQLPPAAR 216
+SA +S F + K++ DE GPS RK K+ +R PAA+
Sbjct: 223 ASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265
>AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical
protein Y73B3A.1 protein.
Length = 659
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +2
Query: 23 IRFSTYNHHS*DYKKSFGECSTGPAV 100
I F YN S K+ GECST PAV
Sbjct: 516 IAFVEYNSRS-SRKRKAGECSTPPAV 540
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 296 EYDESGPSIVHRKCSKRTARQLPPAARGRMLNSG 195
+Y ++G SIV+ KC + P R R LN G
Sbjct: 30 DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 23 IRFSTYNHHS*DYKKSFGECSTGPAV 100
I F+ YN K+ GECST PAV
Sbjct: 1533 ITFAEYNSRR-SQKREAGECSTPPAV 1557
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 23 IRFSTYNHHS*DYKKSFGECSTGPAV 100
I F+ YN K+ GECST PAV
Sbjct: 1512 ITFAEYNSRR-SQKREAGECSTPPAV 1536
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -3
Query: 320 QQMWISKQEYDESG 279
Q W+SK+EY+E G
Sbjct: 370 QDFWVSKKEYEEGG 383
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 329 STFQQMWISKQEYDESGPSI 270
S +++WISK+ E GPS+
Sbjct: 3 SEARKLWISKRSLSEEGPSV 22
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,348,755
Number of Sequences: 27780
Number of extensions: 120703
Number of successful extensions: 342
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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