Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1224
(349 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 62 7e-11
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 61 2e-10
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 61 2e-10
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 61 2e-10
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 61 2e-10
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 61 2e-10
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 59 7e-10
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 59 7e-10
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 52 1e-07
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 51 2e-07
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 48 2e-06
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 45 1e-05
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 38 0.002
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro... 30 0.49
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 29 0.85
At3g13800.1 68416.m01743 metallo-beta-lactamase family protein s... 28 1.5
At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,... 28 2.0
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 28 2.0
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 26 6.0
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 26 6.0
At1g59840.2 68414.m06740 expressed protein 26 6.0
At1g59840.1 68414.m06739 expressed protein 26 6.0
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 26 6.0
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 62.5 bits (145), Expect = 7e-11
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDESGPSIVHRKC
Sbjct: 349 ASLSTFQQMWISKSEYDESGPSIVHRKC 376
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWI+K EYDESGPSIVHRKC
Sbjct: 349 ASLSTFQQMWIAKAEYDESGPSIVHRKC 376
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWI+K EYDESGPSIVHRKC
Sbjct: 349 ASLSTFQQMWIAKAEYDESGPSIVHRKC 376
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWI+K EYDESGPSIVHRKC
Sbjct: 349 ASLSTFQQMWIAKAEYDESGPSIVHRKC 376
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWI+K EYDESGPSIVHRKC
Sbjct: 349 ASLSTFQQMWIAKAEYDESGPSIVHRKC 376
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 60.9 bits (141), Expect = 2e-10
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWI+K EYDESGPSIVHRKC
Sbjct: 349 ASLSTFQQMWIAKAEYDESGPSIVHRKC 376
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 59.3 bits (137), Expect = 7e-10
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDE+GP IVHRKC
Sbjct: 349 ASLSTFQQMWISKAEYDEAGPGIVHRKC 376
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 59.3 bits (137), Expect = 7e-10
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTFQQMWISK EYDE+GP IVHRKC
Sbjct: 349 ASLSTFQQMWISKAEYDEAGPGIVHRKC 376
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 52.0 bits (119), Expect = 1e-07
Identities = 20/28 (71%), Positives = 26/28 (92%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLST++QMWI+K EY+E+GP+IVH KC
Sbjct: 301 ASLSTYEQMWITKAEYEENGPAIVHTKC 328
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLSTF QMWI+K EY+E G +IVHRKC
Sbjct: 338 ASLSTFHQMWITKDEYEEHGAAIVHRKC 365
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 48.0 bits (109), Expect = 2e-06
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASLS+F MWI+K EYDE G +IVHRKC
Sbjct: 350 ASLSSFAPMWITKAEYDEQGGAIVHRKC 377
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 45.2 bits (102), Expect = 1e-05
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = -3
Query: 338 ASLSTFQQMWISKQEYDESGPSIVHRKC 255
ASL +FQQMW SK EY+E G S + RKC
Sbjct: 413 ASLGSFQQMWFSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -3
Query: 320 QQMWISKQEYDESGPSIVHRKC 255
Q ++K +YDE+GPS+VHRKC
Sbjct: 341 QNQHVTKADYDETGPSVVHRKC 362
>At3g32400.1 68416.m04142 formin homology 2 domain-containing
protein / FH2 domain-containing protein common family
members: At2g43800, At3g25500, At5g48360, At4g15200,
At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
thaliana];
Length = 488
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 349 SDPQPPSLPSNKCGSRNRSTTSLAPPLYTGSALNAPRVS 233
S P PP LP K + + PPL++ S + AP S
Sbjct: 30 SSPLPPPLPPKKLLATTNTPPPPPPPLHSNSQMGAPTSS 68
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 29.1 bits (62), Expect = 0.85
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 349 SDPQPPSLPSNKCGSRNRSTTSLAPPLYTGSALNAPRVS 233
S P PP LP K + PPL++ S + AP S
Sbjct: 619 SSPLPPPLPPKKLLATTNPPPPPPPPLHSNSRMGAPTSS 657
>At3g13800.1 68416.m01743 metallo-beta-lactamase family protein
similar to Metal Dependent Hydrolase GB:AAD18619 from
[Chlamydophila pneumoniae]
Length = 361
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 265 TGSALNAPRVSCLQQPAAGCSI 200
TG++ PRVSCL P CS+
Sbjct: 85 TGTSEGIPRVSCLTNPLKTCSV 106
>At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 847
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -1
Query: 310 GSRNRSTTSLAPPLYTGSALNAPRVSCLQQPAAGCSIQACN 188
G+ RS T+ A + G P V C Q A I ACN
Sbjct: 199 GAPGRSYTNWAAKMAVGLGTGVPWVMCKQDDAPDPIINACN 239
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 322 SNKCGSRNRSTTSLAPPLYTGSALNA 245
++K GSR+RS + P L+TG LN+
Sbjct: 1257 TSKAGSRSRSASVSKPSLHTGIRLNS 1282
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 349 SDPQPPSLPSNKCGSRNRSTTSLAPPLYTGSALNAPRVSCLQQPA 215
S P PP L S K ++S + + PP T + S + PA
Sbjct: 262 SSPSPPPLLSPKASENHQSKSPMPPPSPTAQISLSSLKSPIPSPA 306
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 349 SDPQPPSLPSNKCGSRNRSTTSLAPPLYTGSALNAP 242
S+P PP P + ++ T S PP+ GS+ + P
Sbjct: 234 SEPTPPPPPPSIAVKQSAPTPSPPPPIKKGSSPSPP 269
>At1g59840.2 68414.m06740 expressed protein
Length = 297
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 252 RALPVYNGGARLVVLLF 302
R+LP+Y GGA L+ +LF
Sbjct: 67 RSLPIYVGGASLLAVLF 83
>At1g59840.1 68414.m06739 expressed protein
Length = 297
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 252 RALPVYNGGARLVVLLF 302
R+LP+Y GGA L+ +LF
Sbjct: 67 RSLPIYVGGASLLAVLF 83
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 26.2 bits (55), Expect = 6.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 277 GPDSSYSCFEI 309
GPDSSYSC E+
Sbjct: 354 GPDSSYSCLEV 364
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,912,853
Number of Sequences: 28952
Number of extensions: 112207
Number of successful extensions: 309
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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