Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1222
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    29   0.65 
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    28   0.86 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.6  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   6.1  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   6.1  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.0  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   8.0  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   8.0  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 572 FPAQSPAPGCPSADVRSPGPS 510
           FPA  PAPG P  + R P P+
Sbjct: 520 FPAGGPAPGYPGMNARGPVPA 540


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 40  QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 186
           QR    K+D+KEK +    ++A V+ +E+A   L+ A K   +   K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 41  NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRPDQNSTTDAMAKSYSMY 220
           + S     +   S+  T SAT      S   A ++  +S+      NSTT A A S S+ 
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246

Query: 221 SLLAA 235
           S +++
Sbjct: 247 STVSS 251


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +2

Query: 320 HHAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRSRTA 445
           H+A  +  + ++  SV++ G  ++  +EKG   + ++R+  A
Sbjct: 607 HNAPKKKNLNDSLKSVELEGNGIKLSSEKGKNNVNKVRNDNA 648


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 391 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 299
           S  FS++ Y    F NTC  F +    S  E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 7   SQKVEKPVLSGQRIKTRKRDE 69
           +Q++++PV  G  IK  K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 8   VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSG 127
           V+R K    +   +RPE EM      +  +  LWY  WSG
Sbjct: 43  VKRKKQPARKQIETRPEYEMEPEQPGQVYN--LWYNKWSG 80


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 407 LFHFLFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDA 291
           LFH+ + H FQVL      H YL      + +L G E A
Sbjct: 150 LFHYFYIHIFQVL------HLYLLASPTYIAMLAGNERA 182


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 201 RSHIRCTHCWRPAAAGRFVSMDGESPKTNTCIFSAN 308
           RSH+  T   +    G    +D E P  +TC+  A+
Sbjct: 200 RSHLEWTKGRKAQTHGTAYMLDNEDPSKSTCVAIAD 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,811
Number of Sequences: 5004
Number of extensions: 58617
Number of successful extensions: 212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)