Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1222
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    74   1e-13
SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)                  30   1.6  
SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   2.1  
SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)                 29   2.1  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 29   2.1  
SB_29994| Best HMM Match : Ank (HMM E-Value=0)                         29   2.7  
SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   29   3.6  
SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)                    28   4.8  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)             28   4.8  
SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)                       28   6.3  
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)                  28   6.3  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 27   8.4  
SB_23086| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_10207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)               27   8.4  
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)               27   8.4  

>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/72 (48%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
 Frame = +3

Query: 237 AAAGRFVSMDGESP---KTNTCIFSANEDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKK 407
           AA G  +  DG +P   KTN CIF AN D +T+R   Q+  KL+ RY+YL+K +E+EM K
Sbjct: 58  AAPGGSIVEDGPNPSTYKTNICIFEANNDNETLRKHVQMHNKLICRYRYLQKSYEDEMNK 117

Query: 408 VLVYLKGFDPEQ 443
           +L++LKGF  E+
Sbjct: 118 ILLFLKGFTDEE 129



 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 35/66 (53%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
 Frame = +1

Query: 67  EKEKYDPNGFRDALVQGLERA---GGDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGL 237
           EKEK+ P GFRDA++ GL      G DL+   K+LD++G KL+YR YGE +FDVL A   
Sbjct: 2   EKEKHHPLGFRDAIISGLNDLNDKGYDLEQVAKFLDTSGGKLNYRLYGEFLFDVLFAA-- 59

Query: 238 LLPGGS 255
             PGGS
Sbjct: 60  --PGGS 63


>SB_42832| Best HMM Match : ShTK (HMM E-Value=4.6e-07)
          Length = 500

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 432 RSLSSRPEPFSFPLRTFFPSTCT---DASVSRIPVRNFAW 322
           RS+S  P+P+ +P+ T +P   T     +VS+  VR + W
Sbjct: 177 RSVSPAPQPYPYPIGTLYPYQPTPVPGVTVSQPKVRGWQW 216


>SB_23284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 177 KTRLPTLWRSHIRCTHCWRPAAAG 248
           + RLP  WRS  R  H W+P+  G
Sbjct: 19  RDRLPFQWRSRARRNHGWKPSLKG 42


>SB_59343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 395 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 288
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 140 VFAHIISTEVPTVQFNQYWVEISDAL-ISLGGVSQG 174


>SB_57496| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 609

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 44  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 190
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_44951| Best HMM Match : TSP_1 (HMM E-Value=3.2e-13)
          Length = 366

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 44  GSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTST*TRP--DQNSTT 190
           G +  KE +K     TV  T  +     P AIS+QPT    +P  D+N  T
Sbjct: 40  GGQYSKEQQKAGQDNTVDMTQQHDRMGDPDAISSQPTEDTVKPMADKNRPT 90


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 229 GGLLLPGGSCRWTANRPRPTPASSPPMRIWTPCEIS 336
           GG   P  +  WT+   R  P S P + IW   EIS
Sbjct: 360 GGTPSPTSAASWTSREER-MPTSEPALNIWGSSEIS 394


>SB_29994| Best HMM Match : Ank (HMM E-Value=0)
          Length = 407

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 504 DGGTHPLPIHSAVMRGQLDAAVRDRSLSSRPEPFSFPLRTFFPSTCTDASV 352
           + G H  P+H A  RG  D  VR    ++RP   +   RT     C   +V
Sbjct: 224 NAGGHS-PLHEAAYRGHADVLVRLLQQNARPNDKNLQKRTPLHEACQQGNV 273


>SB_56202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 5/35 (14%)
 Frame = +1

Query: 37  GQRIKTRKRDEK-----EKYDPNGFRDALVQGLER 126
           G++ K RK DEK     +K+DP+G    LV+ LER
Sbjct: 204 GEKDKGRKSDEKSEDGEKKFDPSGCDKDLVEALER 238


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 8   VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSGP 130
           V R K +  RV     + + R+R   +     LWYR WS P
Sbjct: 560 VEREKREKERVQKKLEKDKERERQREQKRKEALWYREWSRP 600


>SB_56651| Best HMM Match : DUF496 (HMM E-Value=8.5)
          Length = 114

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 395 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 288
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 11  VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 45


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 395  LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 288
            +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 1227 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 1261


>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1264

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 395 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 288
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167


>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 395 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 288
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 131 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 165


>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
          Length = 285

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 395 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 288
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 133 VFAHIKSTEVPTVQFNQYWVEISDAL-ISLGGVSQG 167


>SB_4026| Best HMM Match : MSSP (HMM E-Value=1.3)
          Length = 109

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 309 EDMDTMRNFEQVFVKLMRRYKYLEKMFEEEMKKV 410
           +DM  MR   Q++ K MRR + L +M  ++M+++
Sbjct: 68  KDMRRMRGLHQMWAKDMRRMRSLPQMRAKDMRRM 101


>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
          Length = 409

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 163 LGTCRLRRDRHRPAPDPVPERRGNRSGHTSLSHLFFWS*S-VDPIILVF 20
           L  C + RDR+     P+   R   + HT++  +F W  S V  +I ++
Sbjct: 26  LSLCAITRDRYLAVTSPLQYLRRMPNAHTAVQIVFCWVTSLVSAVITIY 74


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 395 LFEHFFQVLVPTHQFHEYLFEISHGVHILIGGEDAG 288
           +F H     VPT QF++Y  EIS  + I +GG   G
Sbjct: 293 VFAHIKSTEVPTVQFNQYWKEISDAL-ISLGGVSQG 327


>SB_23086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 332 FRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRSRTAASSWP-RMTALWIGN 487
           F  G+R TD   +   + VR     G G  ERL  R +A+S    MT+L  G+
Sbjct: 310 FSQGLRPTDFWTEAKRRFVRPSPGGGGGTAERLPPRQSATSRSMAMTSLLCGS 362


>SB_10207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 332 FRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRSRTAASSWP-RMTALWIGN 487
           F  G+R TD   +   + VR     G G  ERL  R +A+S    MT+L  G+
Sbjct: 323 FSQGLRPTDFWTEAKRRFVRPSPGGGGGTAERLPPRQSATSRSMAMTSLLCGS 375


>SB_53392| Best HMM Match : Thermopsin (HMM E-Value=0.49)
          Length = 750

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 133 GDLDAAYKYLDSAGSKLDYRRYGEVIFDVLIAGGLLLPGG 252
           G     +KY  SAG+  DY  Y  V  DV++   + L  G
Sbjct: 486 GTTKLTFKYRLSAGTNADYSVYALVFIDVVVKYNVRLTRG 525


>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
          Length = 564

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 244 PGGSCRWTANRPRPTPASSP 303
           P G   W AN P PTP  +P
Sbjct: 107 PHGRSSWLANAPYPTPLDTP 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,780,840
Number of Sequences: 59808
Number of extensions: 489297
Number of successful extensions: 1770
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)