Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1221
         (654 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB77CC Cluster: PREDICTED: similar to Prominin-l...    38   0.28 
UniRef50_Q0BXN5 Cluster: Deoxyribodipyrimidine photolyase family...    33   4.5  
UniRef50_Q0J1T5 Cluster: Os09g0413700 protein; n=6; Magnoliophyt...    33   7.9  
UniRef50_Q16LQ3 Cluster: Prominin (Prom) protein; n=3; Culicidae...    33   7.9  

>UniRef50_UPI0000DB77CC Cluster: PREDICTED: similar to Prominin-like
           protein; n=2; Apocrita|Rep: PREDICTED: similar to
           Prominin-like protein - Apis mellifera
          Length = 974

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 505 GPLYNSTHMIIDAIANKQAYPEGIVSVSDG 594
           G LYN T+  ID +  KQAYPEG+ +V +G
Sbjct: 88  GQLYNVTNTFIDWVQTKQAYPEGMFTVVNG 117


>UniRef50_Q0BXN5 Cluster: Deoxyribodipyrimidine photolyase family
           protein; n=2; Rhodobacterales|Rep: Deoxyribodipyrimidine
           photolyase family protein - Hyphomonas neptunium (strain
           ATCC 15444)
          Length = 536

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/58 (36%), Positives = 26/58 (44%)
 Frame = -1

Query: 438 GVARSITSDISRIRLLADFIHVVSDFGSRTPPQTHPEYQHQKPTHFAGCSRYTIYITG 265
           G A SI S ISR++    FI  + D  S      HP Y   +P   AG  R   +I G
Sbjct: 266 GFAASIGSFISRLQWHCHFIQKLEDQTSIESRNLHPGYDGLRPEPLAGDPRLAAWIEG 323


>UniRef50_Q0J1T5 Cluster: Os09g0413700 protein; n=6;
           Magnoliophyta|Rep: Os09g0413700 protein - Oryza sativa
           subsp. japonica (Rice)
          Length = 337

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 25/94 (26%), Positives = 38/94 (40%)
 Frame = -2

Query: 572 PSGYACLLAIASMIICVELYSGPWLACRIADWPHKLC*LWVSSN*ESPGP*RPTYQGSGC 393
           P+  A   A AS ++ V   + P  A R      +     V+S    P P  P  + +G 
Sbjct: 3   PTAAAATAAFASPVVAVPSRAAPLAARRRLRRARRFAVRSVASPPTVPKPAAPPSK-TGK 61

Query: 392 WLILFMSCPISAREHRHKHTQNTNTKNRHILPAV 291
           W   F   PI+     H+H    N KN  ++P +
Sbjct: 62  WQWTFEDKPINIYYEEHEHETAENVKNILMIPTI 95


>UniRef50_Q16LQ3 Cluster: Prominin (Prom) protein; n=3;
           Culicidae|Rep: Prominin (Prom) protein - Aedes aegypti
           (Yellowfever mosquito)
          Length = 905

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 508 PLYNSTHMIIDAIANKQAYPEGIVSVSDGHLDI 606
           PLYN T+++I    +    PEG + V +G++D+
Sbjct: 118 PLYNLTNLVIKLFVDTNPVPEGYLIVREGNIDL 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 726,153,199
Number of Sequences: 1657284
Number of extensions: 15902470
Number of successful extensions: 38945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38919
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)