Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1221
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    26   4.1  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    26   4.1  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.5  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 484 AIRHASHGPLYNSTHMIIDAIAN---KQAYPE 570
           AIR  SHG L NS    IDA +N   K+ +P+
Sbjct: 31  AIRQLSHGSLRNSRSCRIDAKSNTLTKEIFPK 62


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 220 PRTRYK*CMVHRLLEASNVNSVTGTAGKMC 309
           P  RY   +VHRLLE S  N+  G   K C
Sbjct: 768 PIRRYPDIIVHRLLERSLKNTSPGIDKKNC 797


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 339 THPEYQHQKPTHFAGCS-RYTIYITGFQKTMHHALFISGSGVNCLFDKQTPRYPKH 175
           +HP Y  Q PT +  CS   + +       +H+ L +S   V  L     P+ P H
Sbjct: 111 SHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQPV--LRPPPVPQVPSH 164


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 297 GCSRYTIYITGFQKTMHHALFISGSGVNC--LFDKQTP 190
           GC+   +Y+   Q+T    ++   + VNC  LFD +TP
Sbjct: 236 GCNDGAVYVEDVQRTSPILVYRCSNAVNCVQLFD-ETP 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,272
Number of Sequences: 5004
Number of extensions: 66797
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)