Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1221
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598...    33   0.26 
03_06_0236 - 32545561-32546961                                         31   0.61 
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    30   1.4  
02_01_0532 + 3863744-3863754,3864223-3864874                           29   2.4  
07_03_1531 + 27515829-27516046,27516238-27516451,27517223-275173...    29   4.3  
07_01_0432 + 3290546-3291911,3291972-3291988                           28   5.6  
01_03_0056 + 12089404-12090300,12090429-12090581,12090999-120911...    28   5.6  
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929...    28   7.5  

>09_04_0108 +
           14657020-14657193,14659040-14659355,14659728-14659887,
           14661265-14661725,14663778-14663856,14664732-14664882,
           14665414-14665467,14665724-14665888
          Length = 519

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 25/94 (26%), Positives = 38/94 (40%)
 Frame = -2

Query: 572 PSGYACLLAIASMIICVELYSGPWLACRIADWPHKLC*LWVSSN*ESPGP*RPTYQGSGC 393
           P+  A   A AS ++ V   + P  A R      +     V+S    P P  P  + +G 
Sbjct: 3   PTAAAATAAFASPVVAVPSRAAPLAARRRLRRARRFAVRSVASPPTVPKPAAPPSK-TGK 61

Query: 392 WLILFMSCPISAREHRHKHTQNTNTKNRHILPAV 291
           W   F   PI+     H+H    N KN  ++P +
Sbjct: 62  WQWTFEDKPINIYYEEHEHETAENVKNILMIPTI 95


>03_06_0236 - 32545561-32546961
          Length = 466

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 462 LIMGVE*LGVARSITSDISRIRLLADFIHVVSDFGSRTPPQTH 334
           +I G+E L V RS+  D +R R LAD   V+        P+TH
Sbjct: 183 VIHGIERLLVPRSVQEDFNRRRSLADISAVLPTGAPEVDPRTH 225


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 368 PISAREHRHKHTQNTNTKNRHILPAVPVTLFTLLA 264
           P+    H H H  + N + R I+P V + +F + A
Sbjct: 90  PVRTYHHHHHHNNSNNHRLRRIIPRVLLAVFAIYA 124


>02_01_0532 + 3863744-3863754,3864223-3864874
          Length = 220

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 371 CPISAREHRHKHTQNTNTKNRHIL-PAVPVTLFTLLASRRRCTMHYLYLV 225
           C  S   +   HT +T T  RHIL   VPVTL  LL   +   +H + LV
Sbjct: 4   CATSTSWNTPLHT-HTRTVRRHILLRGVPVTLIVLLLPPQPTCLHRISLV 52


>07_03_1531 +
           27515829-27516046,27516238-27516451,27517223-27517327,
           27517432-27517830
          Length = 311

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 385 FYSCRVR-FRLANTATNTPRIPTPKTDTFCRLFPLHYLHY 269
           FY C    F++A   T+ P    P  DT C L   HY H+
Sbjct: 170 FYDCAFYGFQMACERTHGPDPLPPLQDTLCDLKGRHYFHH 209


>07_01_0432 + 3290546-3291911,3291972-3291988
          Length = 460

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 462 LIMGVE*LGVARSITSDISRIRLLADFIHVVSDFGSRTPPQTH 334
           +I G+E L V RS+  D +R R LA    V+        P+TH
Sbjct: 181 VIHGIERLLVPRSVQEDFNRRRSLAAISAVLPTGAPEVDPRTH 223


>01_03_0056 +
           12089404-12090300,12090429-12090581,12090999-12091157,
           12091575-12091734,12092185-12092201,12092682-12092798,
           12092914-12093303
          Length = 630

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 462 LIMGVE*LGVARSITSDISRIRLLADFIHVV 370
           ++M ++  GVA SI SDI  +RLL  + +++
Sbjct: 362 VVMKIQYPGVADSIESDIENVRLLLSYTNLI 392


>09_06_0140 +
           21090686-21091645,21092142-21092221,21092705-21092906,
           21093052-21093327,21093414-21093482,21093638-21093785,
           21094080-21094228,21094897-21095061,21095623-21095732,
           21095868-21095946,21095947-21096240
          Length = 843

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 258 KTMHHALFISGSGVNCLFDKQTPRYPKH 175
           KT H  LFI   GV    D++T ++ KH
Sbjct: 310 KTSHDKLFIKTGGVMATHDEETRKFFKH 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,714,453
Number of Sequences: 37544
Number of extensions: 446905
Number of successful extensions: 1109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)