Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1221
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)                 29   4.4  
SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)                28   5.8  

>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 361 RLANTATNTPRIPTPKTDTFCRLFPLHYLHYWLPEDDAP 245
           +L N  +  PR+PT   ++    FPLH+     PE+DAP
Sbjct: 798 KLMNDMSEVPRVPTLIDESSALHFPLHH-----PENDAP 831


>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 359 PKSDTT*IKSASNLILDMSDVMDLATPNYSTPIINTTYVASLQFD 493
           P+  TT IKS  N++ + +       P+Y+    N+ ++A + F+
Sbjct: 131 PQHQTTPIKSYKNILQEFAQGSAKLLPSYTVDTTNSGFIAEVNFE 175


>SB_54575| Best HMM Match : S10_plectin (HMM E-Value=0)
          Length = 166

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = -2

Query: 341 KHTQNTNTKNRHILPAVPVTLFTLLASRRRCTMHYLYLVLG*TVCLINKLRDTLNTNTIE 162
           KHTQ  N  N H++ A+           + C  HY + +   T   I  LRD L+  T  
Sbjct: 31  KHTQIENVPNLHVIKALQSLKSRGYVEEKFCWKHYYWNL---TNEGITYLRDFLHLPTEI 87

Query: 161 VDNEIKFDIFQRDNIRHRAPRGI 93
           V   ++  + + +  R R P+G+
Sbjct: 88  VPATLRRQVTRAETARPR-PKGM 109


>SB_45869| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 939

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 553 YWR*RR*SYVWSCIAAHGSHVELQTGHISC 464
           YW+ R+    W CI    S +  +TG  +C
Sbjct: 570 YWQTRKLGCCWECIKCSESSISTKTGSTNC 599


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,088,030
Number of Sequences: 59808
Number of extensions: 535067
Number of successful extensions: 1370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)