Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1221
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56120.1 68418.m07001 expressed protein similar to unknown pr...    32   0.29 
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ...    29   2.7  
At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein / ...    29   3.6  
At5g05580.1 68418.m00606 omega-3 fatty acid desaturase, chloropl...    28   4.7  
At4g11610.1 68417.m01859 C2 domain-containing protein contains I...    28   6.2  

>At5g56120.1 68418.m07001 expressed protein similar to unknown
           protein (dbj|BAA81760.1)
          Length = 236

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 118 ILSRWKISNFISLSTSIVFVFRVSRSLFIKQTVY 219
           +  +W I + +SL+TS+V VF V   LF+   VY
Sbjct: 122 VCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVY 155


>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein contains Pfam
           profile PF02469: Fasciclin domain
          Length = 445

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 462 LIMGVE*LGVARSITSDISRIRLLADFIHVVSDFGSRTPPQTH 334
           +I G+E L + RS+  D +R R L     V+ +      P+TH
Sbjct: 165 IIHGIERLLIPRSVQEDFNRRRSLRSISAVIPEGAPEVDPRTH 207


>At3g52370.1 68416.m05756 beta-Ig-H3 domain-containing protein /
           fasciclin domain-containing protein weak similarity to
           osteoblast specific factor 2 [Homo sapiens] GI:393319;
           contains Pfam profile PF02469: Fasciclin domain;
           supporting cDNA gi|26450295|dbj|AK117608.1|
          Length = 436

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 462 LIMGVE*LGVARSITSDISRIRLLADFIHVVSDFGSRTPPQTH 334
           +I G+E L + RS+  D +R R L     V+ +      P+TH
Sbjct: 157 IIHGIERLLIPRSVQEDFNRRRSLRSIAAVLPEGAPEVDPRTH 199


>At5g05580.1 68418.m00606 omega-3 fatty acid desaturase,
           chloroplast, temperature-sensitive (FAD8) identical to
           SP:48622 Temperature-sensitive omega-3 fatty acid
           desaturase, chloroplast precursor (EC 1.14.19.-)
           {Arabidopsis thaliana}; contains Pfam profile PF00487:
           Fatty acid desaturase; identical to cDNA plastid fatty
           acid desaturase GI:1030694
          Length = 435

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/48 (20%), Positives = 25/48 (52%)
 Frame = -2

Query: 593 PSDTDTIPSGYACLLAIASMIICVELYSGPWLACRIADWPHKLC*LWV 450
           P +   + +  AC  A+A++++C+    GP    ++   P+ +  +W+
Sbjct: 262 PKEKKDVLTSTACWTAMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWL 309


>At4g11610.1 68417.m01859 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1011

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 383 LFMSCPISAREHRHKHTQNTN 321
           +F + P SA+EH+H+H Q  N
Sbjct: 169 VFYNLPNSAQEHQHQHPQGPN 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,313
Number of Sequences: 28952
Number of extensions: 350322
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)