Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1220
         (570 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RN17 Cluster: Putative uncharacterized protein PY0200...    35   1.5  
UniRef50_Q7RMS2 Cluster: CCAAT-box DNA binding protein subunit B...    35   1.5  
UniRef50_UPI00015ADD14 Cluster: vomeronasal 2 receptor 598; n=1;...    33   3.6  
UniRef50_UPI00006A1B66 Cluster: UPI00006A1B66 related cluster; n...    33   6.2  

>UniRef50_Q7RN17 Cluster: Putative uncharacterized protein PY02008;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY02008 - Plasmodium yoelii yoelii
          Length = 1042

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -3

Query: 445 NKFSLLWTNYM*TKSEILSNSLKQLLVNCYLHTNDAKTYKILIALLKVFAQPNNVNVFVV 266
           N FS    N +    +I  N +K   +N Y H    K  K+ +A+LK+     N+  + V
Sbjct: 530 NNFSPYDNNIL-MNEKIKQNVIKTFKINKYEHVRSRKKKKVKLAILKMLRNNKNIAPYDV 588

Query: 265 MDVRYKKK 242
           +  + KKK
Sbjct: 589 IKEKKKKK 596


>UniRef50_Q7RMS2 Cluster: CCAAT-box DNA binding protein subunit B;
           n=1; Plasmodium yoelii yoelii|Rep: CCAAT-box DNA binding
           protein subunit B - Plasmodium yoelii yoelii
          Length = 961

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
 Frame = -3

Query: 454 KSFNKFSLLWTNYM*TKSE--ILSNSLKQL------LVNCYLHTNDAKTYKILIALLKVF 299
           K  NK+S  + NY+ TK     + N L Q       L+N  +H       ++   +L  F
Sbjct: 273 KDKNKYSKYYINYILTKKLKLFIKNDLIQFINRNINLINNNIHLKIISVKRLFSKVLNNF 332

Query: 298 AQPNNVNVFVVMDVRYKKKIVLKYSCFNKQTRVHWKVNNK*ST 170
              N+ N   +  + Y   +++KY  +NK   +   + NK ST
Sbjct: 333 KLSNSSNNLFIYQILYS--MIIKYGKYNKNKIIKKNIMNKLST 373


>UniRef50_UPI00015ADD14 Cluster: vomeronasal 2 receptor 598; n=1;
           Monodelphis domestica|Rep: vomeronasal 2 receptor 598 -
           Monodelphis domestica
          Length = 748

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 180 LLLTFQCTRVCLLKQEYFSTIFFLYLTSITTKTLTL 287
           L L    T  CLL+Q  F T+F + ++SI +KTLT+
Sbjct: 495 LFLGHPTTVTCLLRQTTFGTLFTVAISSILSKTLTV 530


>UniRef50_UPI00006A1B66 Cluster: UPI00006A1B66 related cluster; n=2;
           Xenopus tropicalis|Rep: UPI00006A1B66 UniRef100 entry -
           Xenopus tropicalis
          Length = 789

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 201 TRVCLLKQEYFSTIFFLYLTSITTKTLTL 287
           T +CLL+Q  FS IF + ++S+  KT+T+
Sbjct: 571 TAICLLRQVVFSLIFTVAVSSVVAKTITV 599


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,936,961
Number of Sequences: 1657284
Number of extensions: 9858962
Number of successful extensions: 22540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22537
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)