Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1220
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   2.6  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    26   4.5  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   5.9  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   7.8  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 5   PKKKSEHILLKCKQFHNMNYQYHNL 79
           PK++ EH+L + K +   +  YHN+
Sbjct: 160 PKRRLEHLLQQAKDYQVSSQVYHNV 184


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
 Frame = +2

Query: 65  QYHNLEIHMLSAVVCKC*ERKWRI-LRFNFLTSAPF----------GRSLIINFPMYSCL 211
           QY+ L +H+L ++V  C   +  I L   FL   PF           + ++ NF MYS L
Sbjct: 355 QYYPLRLHLLKSLVNICRSTRLYIPLSSQFLEMIPFVLRRSSPLSDDKEVMYNFDMYSTL 414

Query: 212 FV 217
            V
Sbjct: 415 HV 416


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 388 NSLKQLLVNCYLHTNDAKTYKILI 317
           NSLK L   CYL T+  + Y I +
Sbjct: 345 NSLKSLCSKCYLRTSFPEKYAIKV 368


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 352 HTNDAKTYKILIALLKVFAQPNNVNVFVVMDVRYKKKIV 236
           + N  K+Y +++  +KV+   N V+         K+KI+
Sbjct: 244 YMNSTKSYSVVVCFVKVYTIENLVDQIKSRKAESKEKII 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,296
Number of Sequences: 5004
Number of extensions: 47699
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)