Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1220
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193...    32   0.37 
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90...    29   3.4  
11_01_0557 + 4394754-4396040                                           27   8.0  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    27   8.0  

>03_05_0013 -
           19718178-19718930,19718997-19719205,19719245-19719325,
           19719581-19720613
          Length = 691

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = -3

Query: 337 KTYKILIALLKVFAQPNNVNVFVVMDVRYKKKIVLKYSCFNKQTRV----HWKVNNK*ST 170
           +T +  +  +K    P N+ V  V   +    +    +   K+T +    +WK+  K ST
Sbjct: 592 RTEQCSMVRIKYGPNPQNIQVVEVEPPKMDSLVKFMQNFLEKETTMPTNRYWKILVKLST 651

Query: 169 ERRRCEKVKPQNTPFPLSALTNNSR 95
             ++ E+ KP +TP P       S+
Sbjct: 652 LAKKLEQSKPSSTPKPKKVWKEKSK 676


>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
            901912-902016,902245-902391,903273-903354,903445-903786,
            903873-904177,904259-904435,904799-904852,905171-905254,
            905855-905968,906048-906321,907552-907926,908003-908267,
            908352-908538,908615-909052,909895-909966,910037-910630,
            911471-911623,911700-911828,912326-912657,912705-912840,
            913046-913491,913580-915087,915169-915431,915622-915738,
            915844-916014,916743-916845,916930-916988,918360-918461,
            918560-918649,918727-918877,919745-919830,919926-920102,
            920915-920978,921859-922008,923132-923211,923311-923376,
            924540-924747,925502-925575,925761-925848,926140-926312,
            926541-926609,926698-926741,927074-927167,927290-927366,
            927475-927552,927992-928085
          Length = 3314

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 128  ISALSTYKQQQITYEFQDCDIDNSYYEIVY 39
            I A+ +  QQQIT E Q   IDN + +  Y
Sbjct: 2684 IVAMQSLDQQQITIEMQSMQIDNQFSDSPY 2713


>11_01_0557 + 4394754-4396040
          Length = 428

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 180 LLLTFQCTRVCLLKQEYFSTIFFLYLTSITT 272
           +LLTF CT VC +++  FS  + +   ++ T
Sbjct: 10  VLLTFMCTNVCYIERVGFSIAYTVAADAVGT 40


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 216 TNKHEYIGKLIISDRPNGADVRKLNRKIRHFRS 118
           TN H Y+ +L I D  N      +N+ + H RS
Sbjct: 528 TNLHGYVRRLSIQDTDNDLSSLLVNKDLSHVRS 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,269,520
Number of Sequences: 37544
Number of extensions: 241132
Number of successful extensions: 512
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)