Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1220
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)                   28   4.7  

>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 274 FVVMDVRYKKKIVLKYSCF-NKQTRVHWKVNNK*STERRRCEKVKPQNT 131
           ++ M+ +Y K ++LKY C  NKQ R  W++ N+  T     E +   +T
Sbjct: 337 YLDMNFKYLKHVILKYMCSDNKQVR--WRIMNERDTLDNERESIPVSST 383


>SB_19906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 78  LKFICYLLLFVSAESGNGVFCGLTFSHRRRSVDHLLL 188
           ++  CY+  FV    GN +  G+     RRS+ H+ +
Sbjct: 18  VRLACYITAFVVGLLGNTLVAGIIIRKPRRSIHHMFI 54


>SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = -3

Query: 331 YKILIALLKVFAQPNNVNVFVVMDVRYKKKIVLKYSCFN 215
           +KI + LL+ F    N  +++++   +K+++   + CF+
Sbjct: 348 FKITMVLLRYFNSAPNFIIYILLKAEFKREVWRMFRCFS 386


>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1324

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 41  KQFHNMNYQYHNLEIHMLSAVVCKC*ERKWRILRFN 148
           K +H+M Y + +++  ++      C E  WR  ++N
Sbjct: 198 KSYHSMKYHFKSIDTWLMGICKSYCSEHSWRKSQYN 233


>SB_12134| Best HMM Match : Toxin_4 (HMM E-Value=1.3)
          Length = 210

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 5   PKKKSEHILLKCKQFHNMNYQYHNLEIHMLSAVVCKC*ERKWRIL 139
           P++   H+L  C +        HN   H+LS +   C  R+W++L
Sbjct: 43  PQQFLGHVLQTCPRTWGSRISRHN---HVLSLIAKACRSRRWQVL 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,415,292
Number of Sequences: 59808
Number of extensions: 316861
Number of successful extensions: 698
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)