Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1220
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64836-9|AAG24062.2|   93|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z79755-2|CAB02107.1|  294|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical pr...    27   7.2  
DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting prote...    27   7.2  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   9.5  
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    27   9.5  

>U64836-9|AAG24062.2|   93|Caenorhabditis elegans Hypothetical
           protein F10G2.9 protein.
          Length = 93

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 17  SEHILLKCKQFHNMNYQYHNLEIHML 94
           + H+LLKCK  H  NY  +  + H++
Sbjct: 57  TRHVLLKCKNLHTSNYTMYR-DYHIM 81


>Z79755-2|CAB02107.1|  294|Caenorhabditis elegans Hypothetical
           protein F43G9.3 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 134 YAISALSTYKQQQITYEFQDCDIDNSYYEIVY 39
           YA S+  TY+  +I Y     +++NSYY +++
Sbjct: 179 YAGSSFFTYETLKIMYRDHRGEVENSYYRMLF 210


>Z93396-5|CAB07714.1|  633|Caenorhabditis elegans Hypothetical
           protein ZC15.7 protein.
          Length = 633

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 274 FVVMDVRYKKKIVLKYSCFNKQTRVHW 194
           F++   R KK+ +L+ + +NK T +HW
Sbjct: 66  FIMKTRRVKKEALLRLTDYNKATVLHW 92


>DQ645956-1|ABG36764.1|  624|Caenorhabditis elegans molting protein
           MLT-4 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 274 FVVMDVRYKKKIVLKYSCFNKQTRVHW 194
           F++   R KK+ +L+ + +NK T +HW
Sbjct: 66  FIMKTRRVKKEALLRLTDYNKATVLHW 92


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 271  VVMDVRYKKKIVLKYSCFNKQTRVHWKVNN 182
            +V+DV  KK+ V  Y C N   +V+ K N+
Sbjct: 1121 IVLDVADKKQTVYIYRCENSVIKVNGKANS 1150


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 271 VVMDVRYKKKIVLKYSCFNKQTRVHWKVNN 182
           +V+DV  KK+ V  Y C N   +V+ K N+
Sbjct: 360 IVLDVADKKQTVYIYRCENSVIKVNGKANS 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,681
Number of Sequences: 27780
Number of extensions: 261309
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)