Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1220
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.92 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.8  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   3.7  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 78  LKFICYLLLFVSAESGNGVFCGLT 149
           + F+C L+ ++ AE+G  V  G++
Sbjct: 247 ISFLCVLVFYLPAEAGEKVTLGIS 270


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 231 FSTIFFLYLTSITTKTLTLFGCANTFRSAIKIL*VFASFV 350
           + T+FF+Y+    T +L L    + F +A  ++ +F+ F+
Sbjct: 130 YGTLFFIYVQPSATFSLDLNKVVSVFYTA--VIPMFSPFI 167


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 231 FSTIFFLYLTSITTKTLTLFGCANTFRSAIKIL*VFASFV 350
           F +I  + L SI    ++ FGC    R +  +   FASF+
Sbjct: 50  FPSITLIVLGSIIF-VISFFGCCGAIRESHCMTITFASFL 88


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 406 SFTYNSSKAKKIY*MIFIKLYTRI 477
           ++ YN++  KK+Y   + KLY  I
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 406 SFTYNSSKAKKIY*MIFIKLYTRI 477
           ++ YN++  KK+Y   + KLY  I
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNI 111


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 406 SFTYNSSKAKKIY*MIFIKLYTRI 477
           ++ YN++  KK+Y   + KLY  I
Sbjct: 88  NYNYNNNNYKKLYCNNYRKLYYNI 111


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 256 RYKKKIVLKYSCFNKQTRVHWKVNNK*STERRRCEKVKPQN 134
           + K+K++L+Y  + K +  H K   K   ER + +   P++
Sbjct: 55  KLKRKMILEYELYIKYSHTHEK---KLVLERSKTKSKSPES 92


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 231 FSTIFFLYLTSITTKTLTLFGCANTFRSAI 320
           + T+FF+Y+    T +L L    + F +A+
Sbjct: 131 YGTLFFIYVHPSATFSLDLNKVVSVFYTAV 160


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 125 SALSTYKQQQITYEFQDCDIDNSYYEI 45
           SAL ++ +QQ++Y  QD  +   Y ++
Sbjct: 199 SALLSHDEQQLSYFTQDIGLAAYYAQV 225


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 527 FPNLLTFIKYICTHLGKIRVYNLMKI 450
           +PN   F +Y+   LG++    L+K+
Sbjct: 616 YPNFCAFGRYVDNLLGELGGERLLKL 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,059
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)