Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1219
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 123 1e-28
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 9e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 61 5e-10
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 56 3e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 37 0.010
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.27
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 30 1.5
SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17) 30 1.5
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 28 4.5
SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.8
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 27 7.8
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 7.8
SB_39683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.8
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 27 7.8
SB_25683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.8
SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18) 27 7.8
SB_11464| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 7.8
SB_5734| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 7.8
SB_42776| Best HMM Match : rve (HMM E-Value=1.4e-24) 27 7.8
SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36) 27 7.8
SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.8
SB_25715| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.8
SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.8
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 7.8
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 7.8
SB_15492| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 7.8
SB_10990| Best HMM Match : TGF_beta (HMM E-Value=3.5) 27 7.8
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36) 27 7.8
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 27 7.8
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 123 bits (296), Expect = 1e-28
Identities = 56/59 (94%), Positives = 57/59 (96%)
Frame = +3
Query: 249 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 425
G GSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 2 GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 9e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 249
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 61.3 bits (142), Expect = 5e-10
Identities = 27/75 (36%), Positives = 46/75 (61%)
Frame = +3
Query: 207 QTYHREVREGGPGNG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 386
+ Y RE +E ++ +W LD + ER++G T+++ F+T + T++DAPGH
Sbjct: 177 EKYEREAKEKNRE----TWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232
Query: 387 RDFIKNMITGTSQAD 431
+ F+ NMI+G +QAD
Sbjct: 233 KSFVPNMISGATQAD 247
Score = 45.2 bits (102), Expect = 4e-05
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Frame = +1
Query: 187 YKCGGIDKRTIEKFEKEAQEMGKDP---SNMLGYWTN*RXXXXXXXXXXXXXXXXKLAST 357
Y G +DKRT+EK+E+EA+E ++ S L R T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 358 MLPS---LMLLDTEISSRT*SQEPLRLIAPVLIVAAGTGEFEAGIFLKNGQTR*HALLAF 528
+L + + IS T Q L ++ +++A GEFE G F + GQTR HA+LA
Sbjct: 226 LLDAPGHKSFVPNMISGAT--QADLGVL----VISARKGEFETG-FERGGQTREHAMLAK 278
Query: 529 TLGVKQLI 552
T GVK L+
Sbjct: 279 TAGVKHLV 286
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +3
Query: 318 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVA 40
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = +1
Query: 439 VLIVAAGTGEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
+L+V A TGEFEAG F GQTR HA+L +LGV QLI
Sbjct: 41 ILVVDAITGEFEAG-FESGGQTREHAILVRSLGVTQLI 77
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 282 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 431
D ++ ER+RGI++ ++ F + I+D PGH+DF ++ + D
Sbjct: 55 DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVD 104
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 198
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
Frame = +3
Query: 282 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITG 416
DK +ERGIT+D+ F+ + +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122
>SB_56034| Best HMM Match : GATA (HMM E-Value=5.6e-17)
Length = 297
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 432 CACAHRSCRYR*IRSWYLPKERSNPLAC 515
C ++ R R +R WY+PK+ L C
Sbjct: 247 CGIRYKKYRIRCLRCWYIPKKEEKALPC 274
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 118 THINIVVIGHVDSGKSTTTGHLIY 189
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 276 VLDKLKAERERGITI 320
VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 225
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +1
Query: 121 HINIVVIGHVDSGKSTTTGHLIY---KCGGIDKRTIEKFEKEAQEMGKDPSNML 273
H+ VIGH+ ST GHLI C + + + + F+++ + K +N+L
Sbjct: 169 HLTSTVIGHLQHLTSTVIGHLIVIDGDCHSLTEISNQGFDRKTNLLCKLGTNIL 222
>SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 384 HRDFIKNMITGTSQADCACAHRSCRYR 464
H DF+K + +S+ DC +H SC ++
Sbjct: 109 HADFLKGLDRASSKRDCRDSHWSCFFQ 135
>SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 323
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 110 VQPSSSTVSMATSSTGAIKVSGTC 133
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 223 VQPSSSTVSMATSSTGAIKVSGTC 246
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 315 VQPSSSTVSMATSSTGAIKVSGTC 338
>SB_39683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 579
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 279 VQPSSSTVSMATSSTGAIKVSGTC 302
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 182 VQPSSSTVSMATSSTGAIKVSGTC 205
>SB_25683| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 249
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 158 VQPSSSTVSMATSSTGAIKVSGTC 181
>SB_25586| Best HMM Match : RVT_1 (HMM E-Value=2.3e-18)
Length = 802
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 207 VQPSSSTVSMATSSTGAIKVSGTC 230
>SB_11464| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 353
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 29 VQPSSSTVSMATSSTGAIKVSGTC 52
>SB_5734| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 508
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 110 VQPSSSTVSMATSSTGAIKVSGTC 133
>SB_42776| Best HMM Match : rve (HMM E-Value=1.4e-24)
Length = 627
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 147 VQPSSSTVSMATSSTGAIKVSGTC 170
>SB_40058| Best HMM Match : rve (HMM E-Value=5.2e-36)
Length = 1048
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 315 VQPSSSTVSMATSSTGAIKVSGTC 338
>SB_27417| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 538
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 436 VQPSSSTVSMATSSTGAIKVSGTC 459
>SB_25715| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 270
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 110 VQPSSSTVSMATSSTGAIKVSGTC 133
>SB_24279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 315 VQPSSSTVSMATSSTGAIKVSGTC 338
>SB_23207| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 260
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 158 VQPSSSTVSMATSSTGAIKVSGTC 181
>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 528
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 315 VQPSSSTVSMATSSTGAIKVSGTC 338
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 315 VQPSSSTVSMATSSTGAIKVSGTC 338
>SB_15492| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 580
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 182 VQPSSSTVSMATSSTGAIKVSGTC 205
>SB_10990| Best HMM Match : TGF_beta (HMM E-Value=3.5)
Length = 242
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 29 VQPSSSTVSMATSSTGAIKVSGTC 52
>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1677
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 318 VQPSSSTVSMATSSTGAIKVSGTC 341
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 482 IPASNSPVPAATMSTGAISLRGSC 411
+ S+S V AT STGAI + G+C
Sbjct: 660 VQPSSSTVSMATSSTGAIKVSGTC 683
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,127
Number of Sequences: 59808
Number of extensions: 315739
Number of successful extensions: 800
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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