Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1219
(554 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 142 2e-34
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 142 2e-34
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 141 3e-34
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 134 4e-32
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 109 1e-24
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 92 2e-19
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 92 2e-19
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 69 2e-12
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 57 7e-09
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 57 7e-09
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 55 4e-08
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 55 4e-08
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 55 4e-08
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 39 0.002
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.034
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.18
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.18
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 32 0.24
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 29 3.0
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 29 3.0
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 29 3.0
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 28 5.2
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 28 5.2
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 5.2
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 5.2
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 27 6.9
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z72511-6|CAA96659.2| 391|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 142 bits (343), Expect = 2e-34
Identities = 83/150 (55%), Positives = 90/150 (60%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYW 282
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 283 TN*RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVAAGT 462
+ + A + + + + VL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 463 GEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
GEFEAGI KNGQTR HALLA TLGVKQLI
Sbjct: 121 GEFEAGI-SKNGQTREHALLAQTLGVKQLI 149
Score = 134 bits (324), Expect = 4e-32
Identities = 61/69 (88%), Positives = 64/69 (92%)
Frame = +3
Query: 249 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 428
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 429 DCACAHRSC 455
DCA +C
Sbjct: 110 DCAVLVVAC 118
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 142 bits (343), Expect = 2e-34
Identities = 83/150 (55%), Positives = 90/150 (60%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYW 282
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 283 TN*RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVAAGT 462
+ + A + + + + VL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 463 GEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
GEFEAGI KNGQTR HALLA TLGVKQLI
Sbjct: 121 GEFEAGI-SKNGQTREHALLAQTLGVKQLI 149
Score = 134 bits (324), Expect = 4e-32
Identities = 61/69 (88%), Positives = 64/69 (92%)
Frame = +3
Query: 249 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 428
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 429 DCACAHRSC 455
DCA +C
Sbjct: 110 DCAVLVVAC 118
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 141 bits (342), Expect = 3e-34
Identities = 82/150 (54%), Positives = 90/150 (60%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYW 282
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 283 TN*RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVAAGT 462
+ + A + + + + VL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 463 GEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
GEFEAGI KNGQTR HALLA TLGVKQL+
Sbjct: 121 GEFEAGI-SKNGQTREHALLAQTLGVKQLV 149
Score = 134 bits (324), Expect = 4e-32
Identities = 61/69 (88%), Positives = 64/69 (92%)
Frame = +3
Query: 249 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 428
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 429 DCACAHRSC 455
DCA +C
Sbjct: 110 DCAVLVVAC 118
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 134 bits (324), Expect = 4e-32
Identities = 61/69 (88%), Positives = 64/69 (92%)
Frame = +3
Query: 249 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 428
G GSFKYAWVLDKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQA
Sbjct: 50 GKGSFKYAWVLDKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQA 109
Query: 429 DCACAHRSC 455
DCA +C
Sbjct: 110 DCAVLVVAC 118
Score = 109 bits (263), Expect = 1e-24
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 255
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 109 bits (263), Expect = 1e-24
Identities = 50/51 (98%), Positives = 50/51 (98%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 255
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 51
Score = 33.9 bits (74), Expect = 0.079
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3
Query: 249 G*GSFKYAWVLDKLKAER 302
G GSFKYAWVLDKLK +
Sbjct: 50 GKGSFKYAWVLDKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/64 (64%), Positives = 49/64 (76%)
Frame = +3
Query: 246 NG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 425
NG SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 212 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 271
Query: 426 ADCA 437
AD A
Sbjct: 272 ADAA 275
Score = 75.4 bits (177), Expect = 3e-14
Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Frame = +1
Query: 112 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWTN* 291
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK ++ W
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK--ASFAYAWVLD 224
Query: 292 RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQ---EPLRLIAPVLIVAAGT 462
T ++LLD S + A +L+V A T
Sbjct: 225 ETEEERERGVTMDIGRTSF-ETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATT 283
Query: 463 GEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
GEFE G F GQT+ HALL +LGV QLI
Sbjct: 284 GEFETG-FENGGQTKEHALLLRSLGVTQLI 312
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/64 (64%), Positives = 49/64 (76%)
Frame = +3
Query: 246 NG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 425
NG SF YAWVLD+ + ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQ
Sbjct: 230 NGKASFAYAWVLDETEEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQ 289
Query: 426 ADCA 437
AD A
Sbjct: 290 ADAA 293
Score = 75.4 bits (177), Expect = 3e-14
Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 3/150 (2%)
Frame = +1
Query: 112 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWTN* 291
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK ++ W
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGK--ASFAYAWVLD 242
Query: 292 RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQ---EPLRLIAPVLIVAAGT 462
T ++LLD S + A +L+V A T
Sbjct: 243 ETEEERERGVTMDIGRTSF-ETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATT 301
Query: 463 GEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
GEFE G F GQT+ HALL +LGV QLI
Sbjct: 302 GEFETG-FENGGQTKEHALLLRSLGVTQLI 330
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = +3
Query: 207 QTYHREVREGGPGNG*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 386
+ Y RE +E G S+ +W +D ERE+G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRE----SWYLSWCMDTNDEEREKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 387 RDFIKNMITGTSQADCACAHRSCR 458
+ F+ NMI G +QAD A S R
Sbjct: 198 KSFVPNMIVGANQADLAVLVISAR 221
Score = 68.5 bits (160), Expect = 3e-12
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = +1
Query: 106 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKD 258
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G++
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRE 154
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/38 (52%), Positives = 27/38 (71%)
Frame = +1
Query: 439 VLIVAAGTGEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
VL+++A GEFE G F + GQTR H++L T GVK L+
Sbjct: 215 VLVISARRGEFETG-FDRGGQTREHSMLVKTAGVKHLV 251
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 57.2 bits (132), Expect = 7e-09
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D A
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVA 135
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 115 KTHINIVVIGHVDSGKSTTT 174
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 57.2 bits (132), Expect = 7e-09
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+DK K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D A
Sbjct: 83 IDKGKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVA 135
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 115 KTHINIVVIGHVDSGKSTTT 174
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A
Sbjct: 87 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGA 139
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 109 KEKTHINIVVIGHVDSGKSTTT 174
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGA 140
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 109 KEKTHINIVVIGHVDSGKSTTT 174
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 54.8 bits (126), Expect = 4e-08
Identities = 25/53 (47%), Positives = 35/53 (66%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A
Sbjct: 88 IDNAPEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGA 140
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 109 KEKTHINIVVIGHVDSGKSTTT 174
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/40 (47%), Positives = 24/40 (60%)
Frame = +3
Query: 276 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
+LDKL+ ERERGIT+ Y + +ID PGH DF
Sbjct: 76 MLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDF 115
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 243
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = +3
Query: 276 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
V D L ERERGIT+ A + + + +ID PGH DF
Sbjct: 64 VTDFLDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDF 103
Score = 34.3 bits (75), Expect = 0.060
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGI 204
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 35.1 bits (77), Expect = 0.034
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
+D + ER+RGITI A + + IID PGH DF
Sbjct: 87 MDFMDLERQRGITIQSAATYVDWHGTNINIIDTPGHVDF 125
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGID 207
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 198
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 198
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWTN 288
+I+ GH+D S GH +K GI E FE E ++ + P+ GY T+
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATS 1685
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D + E+ RGIT+ + + +ID+PGH DF + + +D A
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIA 110
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D + E+ RGIT+ + + +ID+PGH DF + + +D A
Sbjct: 58 MDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIA 110
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 124 INIVVIGHVDSGKSTTT 174
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 124 INIVVIGHVDSGKSTTT 174
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 97 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 258
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 97 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 258
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 97 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEKFEKEAQEMGKD 258
PK +EK I + +V+ G TTG +CGG ++ R + + AQE KD
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKWKD 1354
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 163 STTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWT 285
STTT HL+ + GG+ Q +GK N++G+ T
Sbjct: 234 STTTAHLVSQAGGLSPLATMP-SCNVQVLGKTKKNLIGFST 273
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 282 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 431
D L E++RG +I I + Y + IID PGH +F M AD
Sbjct: 172 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLAD 226
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 282 DKLKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 431
D L E++RG +I I + Y + IID PGH +F M AD
Sbjct: 47 DILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLAD 101
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 97 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 189
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 97 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 189
P K+ + V+G+VD+GKST G L +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 309 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQAD 431
GIT I + E +K VT +D PGH F G AD
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGAD 229
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 360 VTIIDAPGHRDFI--KNMITGTSQA 428
V IID+ G RDFI KN+ GT+ A
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGTADA 97
>Z72511-6|CAA96659.2| 391|Caenorhabditis elegans Hypothetical
protein F55A11.5 protein.
Length = 391
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 178 HLIYKCGGIDKRTIEKFEKEAQEMGKDPSN 267
+L ++ GGIDK I K+++ + + K PS+
Sbjct: 359 YLSWRYGGIDKYIIFKWQESRKSLQKSPSS 388
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,037
Number of Sequences: 27780
Number of extensions: 240694
Number of successful extensions: 774
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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