Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1219
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 128 2e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 128 2e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 128 2e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 128 2e-30
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 81 6e-16
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 75 4e-14
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 59 2e-09
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 57 9e-09
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 40 0.001
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 40 0.001
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 38 0.005
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 37 0.008
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 36 0.018
At5g13650.2 68418.m01585 elongation factor family protein contai... 35 0.042
At5g13650.1 68418.m01584 elongation factor family protein contai... 35 0.042
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 29 2.1
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 2.1
At5g17060.1 68418.m01999 ADP-ribosylation factor, putative simil... 27 8.4
At2g03360.1 68415.m00295 hypothetical protein contains Pfam doma... 27 8.4
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 128 bits (309), Expect = 2e-30
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +3
Query: 258 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCA
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCA 112
Score = 121 bits (291), Expect = 4e-28
Identities = 79/153 (51%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSN---ML 273
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K +L
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 274 GYWTN*RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVA 453
R K T++ + D + T + + VLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ---ADCAVLIID 117
Query: 454 AGTGEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
+ TG FEAGI K+GQTR HALLAFTLGVKQ+I
Sbjct: 118 STTGGFEAGI-SKDGQTREHALLAFTLGVKQMI 149
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (309), Expect = 2e-30
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +3
Query: 258 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCA
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCA 112
Score = 121 bits (291), Expect = 4e-28
Identities = 79/153 (51%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSN---ML 273
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K +L
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 274 GYWTN*RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVA 453
R K T++ + D + T + + VLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ---ADCAVLIID 117
Query: 454 AGTGEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
+ TG FEAGI K+GQTR HALLAFTLGVKQ+I
Sbjct: 118 STTGGFEAGI-SKDGQTREHALLAFTLGVKQMI 149
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (309), Expect = 2e-30
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +3
Query: 258 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCA
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCA 112
Score = 121 bits (291), Expect = 4e-28
Identities = 79/153 (51%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSN---ML 273
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K +L
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 274 GYWTN*RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVA 453
R K T++ + D + T + + VLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ---ADCAVLIID 117
Query: 454 AGTGEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
+ TG FEAGI K+GQTR HALLAFTLGVKQ+I
Sbjct: 118 STTGGFEAGI-SKDGQTREHALLAFTLGVKQMI 149
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 128 bits (309), Expect = 2e-30
Identities = 57/60 (95%), Positives = 59/60 (98%)
Frame = +3
Query: 258 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCA
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCA 112
Score = 121 bits (291), Expect = 4e-28
Identities = 79/153 (51%), Positives = 91/153 (59%), Gaps = 3/153 (1%)
Frame = +1
Query: 103 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSN---ML 273
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K +L
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 274 GYWTN*RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVA 453
R K T++ + D + T + + VLI+
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ---ADCAVLIID 117
Query: 454 AGTGEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
+ TG FEAGI K+GQTR HALLAFTLGVKQ+I
Sbjct: 118 STTGGFEAGI-SKDGQTREHALLAFTLGVKQMI 149
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 80.6 bits (190), Expect = 6e-16
Identities = 33/63 (52%), Positives = 47/63 (74%)
Frame = +3
Query: 249 G*GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQA 428
G GSF YAW LD+ ERERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QA
Sbjct: 282 GKGSFAYAWALDESAEERERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQA 341
Query: 429 DCA 437
D A
Sbjct: 342 DAA 344
Score = 53.6 bits (123), Expect = 8e-08
Identities = 21/46 (45%), Positives = 34/46 (73%)
Frame = +1
Query: 118 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGK 255
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GK
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGK 283
Score = 35.9 bits (79), Expect = 0.018
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 433 APVLIVAAGTGEFEAGIFLKNGQTR*HALLAFTLGVKQLI 552
A +L++ A G FEAG GQTR HA + GV+Q+I
Sbjct: 343 AAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVI 382
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 74.5 bits (175), Expect = 4e-14
Identities = 48/147 (32%), Positives = 71/147 (48%)
Frame = +1
Query: 112 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKDPSNMLGYWTN* 291
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ ++ M
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 292 RXXXXXXXXXXXXXXXXKLASTMLPSLMLLDTEISSRT*SQEPLRLIAPVLIVAAGTGEF 471
+ ST L + + VL+++A GEF
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF 217
Query: 472 EAGIFLKNGQTR*HALLAFTLGVKQLI 552
E G + + GQTR H LA TLGV +LI
Sbjct: 218 ETG-YERGGQTREHVQLAKTLGVSKLI 243
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = +3
Query: 258 SFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 431
S+ A+++D + ER +G T+++ FET TI+DAPGH+ ++ NMI+G SQAD
Sbjct: 147 SWYMAYIMDTNEEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQAD 204
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 58.8 bits (136), Expect = 2e-09
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQAD 431
+DK E++RGITI A ++ET+K + +D PGH D++KNMITG +Q D
Sbjct: 105 IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMD 155
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 109 KEKTHINIVVIGHVDSGKSTTT 174
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 56.8 bits (131), Expect = 9e-09
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGA 169
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 100 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 234
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
+D + ERE+GITI A Y V IID PGH DF
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDF 146
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGI 204
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
+D + ERE+GITI A Y V IID PGH DF
Sbjct: 108 MDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDF 146
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGI 204
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/39 (46%), Positives = 24/39 (61%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
+D ++ E+ERGITI A K+ + IID PGH DF
Sbjct: 136 MDWMEQEQERGITITSAATTTFWDKHRINIIDTPGHVDF 174
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 115 KTHINIVVIGHVDSGKSTTTGHLIYKCG 198
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = +3
Query: 279 LDKLKAERERGITIDIAL----WKFETSKYYVTIIDAPGHRDF 395
LD + ERERGITI + + +E + + + +ID PGH DF
Sbjct: 123 LDNMDLERERGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDF 165
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 225
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 35.9 bits (79), Expect = 0.018
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCA 437
+D L E+ R IT+ + + Y + +ID+PGH DF + T +D A
Sbjct: 49 MDYLDEEQRRAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGA 101
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCGG 201
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 34.7 bits (76), Expect = 0.042
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +3
Query: 276 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
++D ERERGITI V IID PGH DF
Sbjct: 120 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDF 159
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 34.7 bits (76), Expect = 0.042
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +3
Query: 276 VLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDF 395
++D ERERGITI V IID PGH DF
Sbjct: 119 IMDSNDLERERGITILSKNTSITYKNTKVNIIDTPGHSDF 158
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Frame = +3
Query: 279 LDKLKAERERGITIDIALWKF---------ETSKYYVTIIDAPGHRDF 395
LDKL +RERGIT+ E S Y + +ID PGH DF
Sbjct: 103 LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDF 148
Score = 27.5 bits (58), Expect = 6.4
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 100 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 210
K EK N +I H+D GKST L+ G I K
Sbjct: 60 KFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 127 NIVVIGHVDSGKSTTTGHLIYKCG 198
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At5g17060.1 68418.m01999 ADP-ribosylation factor, putative similar
to ADP-ribosylation factor 1; ARF 1 (GP:385340)
{Drosophila melanogaster)
Length = 192
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 172 TGHLIYKCGGIDKRTIEKFEKEAQEMGKDP 261
T LIY +D+ I K ++E QE+ KDP
Sbjct: 85 TDGLIYVVDSLDRERIGKAKQEFQEIIKDP 114
>At2g03360.1 68415.m00295 hypothetical protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 393
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = -1
Query: 92 WSYGYIDF--TFSLHKTIFFDTHHGLQTAC 9
W YID TFS HKTI D + T C
Sbjct: 137 WMPKYIDILGTFSKHKTILLDKENASITHC 166
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,615,373
Number of Sequences: 28952
Number of extensions: 225514
Number of successful extensions: 679
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -