Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1218
         (316 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   5.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    19   9.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         19   9.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 97  GPASSAACWPPARTGCAS 44
           GP   AAC P +R G  S
Sbjct: 137 GPVRPAACTPDSRVGYGS 154


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 37  AEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVW 165
           A P   Q   +   +L++   SRA  L + L+   TR    VW
Sbjct: 190 ARPRSLQFVDSEGNILEEFVLSRAGGLVNSLYQNATRKVCGVW 232


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 5   SSRSIVLALRTRSRCAPSARWRP 73
           SSRS   A +++ R AP++R  P
Sbjct: 246 SSRSHQPATKSKPRPAPASRNAP 268


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 228 LLGHAGRLLQAVQRA 184
           LLG AG+LL +V  A
Sbjct: 112 LLGDAGKLLASVHFA 126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,532
Number of Sequences: 336
Number of extensions: 897
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)