Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1218
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    62   1e-11
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   2.0  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   2.7  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   2.7  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    24   6.3  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    23   8.3  

>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 62.5 bits (145), Expect = 1e-11
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +1

Query: 22  FGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWK--GTRDGRPVWALNYASRALD 195
           F  ++ + + T+C L ASKLLKKPDQ   + L SHL+W+     D RP        R L+
Sbjct: 613 FSVDDYDTLITKCTLYASKLLKKPDQCCGIYLASHLWWQVASGEDSRP---FQDPKRVLE 669

Query: 196 CLKKAARVAQQCMD 237
           CL+K+ ++A  CMD
Sbjct: 670 CLQKSLKIADACMD 683


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +1

Query: 130 FWKGTRDGRPVWALNYASRALDCLKK--AARVAQQCMDGGVQAHCWPSCW 273
           ++ G  DG+    ++ ASR LDC     A +      DG V +  W S W
Sbjct: 239 YFIGDFDGQTFTPIDSASRILDCGHDCYATQTFGNAPDGRVISISWASNW 288


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 293 PQQRVSAQQLGQQCACTPPSMHCWATRAAF 204
           P  RVS  Q  Q    T P++HC      F
Sbjct: 178 PNGRVSPIQEAQMTTVTDPNVHCITVNGVF 207


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 311 ALVTALPQQRVSAQQLGQQCACTPPSMHCW 222
           A + A P    SA+QL +   C P  +H W
Sbjct: 210 ATIKAFPLPIDSAEQLEKMPGCGPKIVHLW 239


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -2

Query: 228 LLGHA-GRLLQAVQRAGRVVQRPHRAAVPGPLP 133
           L  HA G   Q      R +Q+P  A +P P P
Sbjct: 98  LKSHATGLSTQKTSTLARPIQKPIEATIPAPSP 130


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 174 VQRPHRAAVPGPLPEEMRA 118
           V RP    VP P PE++ A
Sbjct: 241 VARPGLTEVPSPFPEDLHA 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,502
Number of Sequences: 5004
Number of extensions: 13090
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)