Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1218
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0335 + 33211705-33211800,33211886-33211982,33212078-332122... 65 1e-11
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 32 0.11
04_04_1173 + 31469357-31469920 30 0.33
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 30 0.44
12_01_0694 - 5923836-5924450 29 0.58
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375... 29 1.0
04_03_0639 + 18247768-18248196 29 1.0
06_03_0969 - 26413534-26413594,26415020-26415318 28 1.3
03_02_0698 - 10496316-10498127,10498539-10498559 28 1.3
01_05_0726 - 24630080-24630778,24630899-24631011,24631088-246311... 28 1.8
04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158 27 2.3
03_02_0905 - 12292322-12293073,12293288-12293471 27 3.1
12_02_0217 + 15814303-15814905 27 4.1
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 27 4.1
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473... 24 4.9
03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284 26 5.4
11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772 26 7.1
10_01_0204 + 2199778-2200835,2201212-2201311 26 7.1
08_02_0232 - 14584952-14586451 26 7.1
08_01_0477 - 4205562-4206464 26 7.1
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 26 7.1
04_04_1517 + 34125549-34125634,34125725-34125789,34125878-341260... 26 7.1
01_04_0141 + 16618916-16619265,16619400-16619418 26 7.1
11_06_0456 - 23797057-23797383 25 9.4
10_08_0393 + 17517511-17517777,17518913-17518987,17519080-175191... 25 9.4
07_01_1131 - 10510404-10511000 25 9.4
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 25 9.4
05_04_0300 - 19969066-19969535,19971216-19972686 25 9.4
05_03_0289 - 11688733-11691342 25 9.4
03_06_0315 - 33086607-33086858,33087164-33087319,33087508-33087645 25 9.4
03_04_0205 - 18485933-18488446 25 9.4
01_05_0807 + 25409598-25410074 25 9.4
>03_06_0335 +
33211705-33211800,33211886-33211982,33212078-33212204,
33212953-33213138,33213702-33213789,33214028-33214084,
33214171-33214260,33214339-33214461,33215024-33215098,
33215169-33215228,33215464-33215580,33215854-33216093,
33216181-33216246,33216370-33216459,33216914-33217003,
33217309-33217398,33217702-33217770,33217841-33217921,
33218108-33218215,33218336-33218439,33218822-33218935,
33219018-33219231
Length = 793
Score = 65.3 bits (152), Expect = 1e-11
Identities = 33/74 (44%), Positives = 45/74 (60%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
T +++N FG EN + + + ++KLLKKPDQ RAV CSHLFW +DG +
Sbjct: 629 TLQRMNIFGVENRDTLTHKTTGYSAKLLKKPDQCRAVYACSHLFWTDDQDG-----IMDG 683
Query: 181 SRALDCLKKAARVA 222
R L CLK+A R+A
Sbjct: 684 ERVLLCLKRALRIA 697
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 17 IVLALRTRSRCAPSARWRPASC*RSRTRAGPWR-SARISSGRGPGTAAR 160
+ L R APSA ASC S R WR AR+SSG AR
Sbjct: 12 VATTLSARRGTAPSATAAAASCPASSARRTTWRPRARLSSGNAARARAR 60
>04_04_1173 + 31469357-31469920
Length = 187
Score = 30.3 bits (65), Expect = 0.33
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +2
Query: 5 SSRSIVLALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARCG 166
+SR + L TRS +PS S RSR R P R AR +G GT+ G
Sbjct: 44 ASRRLGLPPTTRSFASPSLVLFDTSVSRSRHRCPPHRGARGDAGSEGGTSRHGG 97
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 29.9 bits (64), Expect = 0.44
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 8 SRSIVLALRTRSRCAPSARWRPASC*RSRTRA-GPWRSARISSGRGPGTAAR 160
SRS+ R+RSR +R R S RSR+R+ P RS S +G G A R
Sbjct: 1234 SRSLSSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQGAGPARR 1285
>12_01_0694 - 5923836-5924450
Length = 204
Score = 29.5 bits (63), Expect = 0.58
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 86 RSRTRAGPWRSARISSGRGPGTAAR 160
R++ RAG WR +G G GTA R
Sbjct: 142 RAKRRAGRWRGGGCDAGGGDGTAGR 166
>05_01_0471 -
3751497-3751522,3751760-3751800,3752466-3752507,
3753249-3753310,3753398-3753584,3753692-3753826,
3753872-3753948,3754005-3754076,3754389-3754588,
3754675-3755020,3755463-3755519,3755655-3757433,
3757539-3757720,3757943-3758072
Length = 1111
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 136 KGTRDGRPVWALNYASRALDCLKKAARVAQQCMDGGVQAH 255
+ + G P++ NY+ R L + +AA Q C+D +H
Sbjct: 54 RNVKPGLPLFLFNYSDRKLHGIFEAASPGQMCIDPYAWSH 93
>04_03_0639 + 18247768-18248196
Length = 142
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 23 LALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARCG 166
+ALR R ++R R A+ R R R WRS + GR ARCG
Sbjct: 1 MALRWPVRGGAASRGRLAAAARGR-RGVAWRSGAPAVGREATMLARCG 47
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 26 ALRTRSRCA-PSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
A R RSR A +ARWR + + A R +R + R P AAR
Sbjct: 33 AARRRSRAARATARWRSRAAAQGSPAAAARRRSRGTQARRPPAAAR 78
>03_02_0698 - 10496316-10498127,10498539-10498559
Length = 610
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +1
Query: 118 CSHLFWKGTRDGRPVWALN 174
C LFW R RP WALN
Sbjct: 284 CCALFWSYARKERPDWALN 302
>01_05_0726 -
24630080-24630778,24630899-24631011,24631088-24631169,
24631248-24631337,24631412-24631469,24631661-24631756,
24631835-24631908,24632006-24632068,24634111-24634320,
24634869-24635048
Length = 554
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 138 GDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
GDQ PPG G ++ +P AG + GG + P
Sbjct: 521 GDQQFPPGTGPQMMMPFAG--QGGGQQHP 547
>04_04_0212 + 23646043-23646369,23646457-23647304,23647409-23649158
Length = 974
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 150 RPPGVGAELRVPRAGLPEEGGPRGPAV 230
RP G+ A LR P P+ GPR P+V
Sbjct: 439 RPSGL-ARLRKPLGRRPDSAGPRSPSV 464
>03_02_0905 - 12292322-12293073,12293288-12293471
Length = 311
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 128 SSGRGPGTAARC 163
S GRGPGTA+RC
Sbjct: 43 SRGRGPGTASRC 54
>12_02_0217 + 15814303-15814905
Length = 200
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Frame = +2
Query: 35 TRSRCAPSARWRPASC*---------RSRTRAGPWRSARISSGRGPGTAARC 163
TR R + +WR C R + RAG R + RG GTA RC
Sbjct: 111 TRQRRPEAEQWRQRHCCQRGCTSGGLRGKWRAGWGRGGDCDAERGDGTAGRC 162
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 97 GPASSAACWPPARTGCASAP 38
G +S+ AC PP R+ C AP
Sbjct: 50 GQSSTRACLPPLRSPCLPAP 69
>05_03_0370 +
13144612-13144639,13144749-13145260,13146995-13147327,
13147690-13147699,13149704-13149816,13151187-13151258,
13151397-13151432,13151552-13151597,13151726-13151828,
13151916-13151973,13152231-13152281
Length = 453
Score = 24.2 bits (50), Expect(2) = 4.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 201 QAVQRAGRVVQRPHRAAVPGPLP 133
Q QR + +RPH VPG +P
Sbjct: 190 QPEQRVDGLQRRPHPVQVPGEVP 212
Score = 20.6 bits (41), Expect(2) = 4.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 156 AAVPGPLPEEMRAE 115
A +PG LPE+ R E
Sbjct: 223 AQLPGHLPEDYRRE 236
>03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284
Length = 397
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 242 PPSMHCWATRAAFFRQSSARDA*FSAH 162
P HCW TR FR + F+AH
Sbjct: 129 PFDRHCWGTRRPIFRSEKPKK--FNAH 153
>11_03_0089 + 9794673-9794747,9795216-9795308,9795611-9795772
Length = 109
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 259 WPSCWADTRCCGS 297
+PSCW + RC G+
Sbjct: 20 YPSCWQENRCSGN 32
>10_01_0204 + 2199778-2200835,2201212-2201311
Length = 385
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 11 RSIVLALRTRSRCAPSARWRPASC*RSRTRAG 106
R++ A R+R S+RWR S S RAG
Sbjct: 112 RNVAQAAEARARSTGSSRWRKISTSISSGRAG 143
>08_02_0232 - 14584952-14586451
Length = 499
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 204 LQAVQRAGRVVQRPHRAAVPGPLPEEMRAERHG 106
L V R G +RP A P P P+E A RHG
Sbjct: 21 LSLVVRVGARGRRPGSAPPPPPRPQE--AHRHG 51
>08_01_0477 - 4205562-4206464
Length = 300
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 123 ASLLEGDQGRPPGVGAELRVP 185
+SL +G +GRPP G+ L +P
Sbjct: 20 SSLDDGGRGRPPPAGSTLELP 40
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +3
Query: 156 PGVGAELRVPRAGL--PEEGGPRG 221
PG + L R+GL P +GGPRG
Sbjct: 825 PGAKSSLPAVRSGLGDPNDGGPRG 848
>04_04_1517 +
34125549-34125634,34125725-34125789,34125878-34126085,
34126819-34126911,34127302-34127389,34127788-34128060
Length = 270
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 38 RSRCAPSARWRPASC*RSRTRAGPWRSARISS-GRGPGTAARCG 166
R R PS R R +SC R+ PWRS+ G GTA G
Sbjct: 35 RCRYEPSPR-RLSSCRRAAKNERPWRSSSNEQLTDGDGTAKYMG 77
>01_04_0141 + 16618916-16619265,16619400-16619418
Length = 122
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 98 RAGPWRSARISSGRGPGTAARC 163
R PWR++ + PG+A RC
Sbjct: 5 RRAPWRTSGAARANWPGSADRC 26
>11_06_0456 - 23797057-23797383
Length = 108
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 50 APSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
AP+A+ +PA+ T P + A +++ P A +
Sbjct: 26 APAAKAKPAAAAEKETTPAPVKKAAVAAAASPSAAEK 62
>10_08_0393 +
17517511-17517777,17518913-17518987,17519080-17519133,
17519235-17519300,17519383-17519441,17520143-17520177,
17520527-17520616,17520684-17520730,17520817-17520917,
17521259-17521323,17521819-17522135,17522418-17522481,
17522565-17522740,17523386-17523487,17523704-17523847,
17523937-17524032,17524357-17524458,17524740-17524835
Length = 651
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +1
Query: 4 FEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGR 156
++Q+ GA ++E LK P + + CSH W+ R R
Sbjct: 128 YDQLK-LGARSSEEAARWIRCLMESALKSPRKDEHIVACSHRRWQAFRLSR 177
>07_01_1131 - 10510404-10511000
Length = 198
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Frame = +2
Query: 26 ALRTRSRCAPSARWRPASC*R---------SRTRAGPWRSARISSGRGPGTAAR 160
A TR R + +WR C R + RAG R +G G GTA R
Sbjct: 106 AQETRQRRPEAEQWRQRHCCRRGCTSGGVRGKRRAGRGRGGDYDAGGGDGTAGR 159
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 124 HLFWKGTRDGRPVWALNYASRALDC 198
H FW+ T GR A A+ A DC
Sbjct: 37 HFFWRRTTSGRQSLASLLAATAPDC 61
>05_04_0300 - 19969066-19969535,19971216-19972686
Length = 646
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 183 GRVVQRPHRAAVPGPLPEEMRAERHGPAL 97
G+ V R ++ GPLP+ R GP L
Sbjct: 466 GKDVNRQETSSADGPLPQWFREGMEGPIL 494
>05_03_0289 - 11688733-11691342
Length = 869
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 187 ALDCLKKAARVAQQCM-DGGV 246
A DCLKK A A++C+ D GV
Sbjct: 769 APDCLKKFAETAEKCLADHGV 789
>03_06_0315 - 33086607-33086858,33087164-33087319,33087508-33087645
Length = 181
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 53 PSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARC 163
PS R+R R TRA RS S G P RC
Sbjct: 57 PSERYRHCGSRRGATRADEARSGVPSLGYVPSRPGRC 93
>03_04_0205 - 18485933-18488446
Length = 837
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 246 HTAVHALLGHAGRLLQAVQRAGRVVQRP 163
+T + LLG AGRL A+Q G + P
Sbjct: 605 YTCIVRLLGRAGRLNDALQFIGDIPSAP 632
>01_05_0807 + 25409598-25410074
Length = 158
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 113 RSARISSGRGPGTAARCG 166
RSA + G G G AARCG
Sbjct: 129 RSAAMQHGDGGGRAARCG 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,791,653
Number of Sequences: 37544
Number of extensions: 141308
Number of successful extensions: 633
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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