Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1218
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   4e-27
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.60 
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.79 
SB_21785| Best HMM Match : DIX (HMM E-Value=4.4)                       29   1.0  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.4  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    27   3.2  
SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.6  
SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_55403| Best HMM Match : Homeobox (HMM E-Value=8e-07)                26   7.4  
SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47)                   26   7.4  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    25   9.8  
SB_25350| Best HMM Match : Collagen (HMM E-Value=0)                    25   9.8  
SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_46890| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)             25   9.8  
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)                   25   9.8  
SB_6497| Best HMM Match : TP2 (HMM E-Value=3.8)                        25   9.8  

>SB_39745| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score =  116 bits (279), Expect = 4e-27
 Identities = 53/83 (63%), Positives = 61/83 (73%)
 Frame = +1

Query: 1   TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
           TFEQ++CFG EN EP+RTQCALAASKLLKKPDQ RAVA+CSHLFW G          +  
Sbjct: 546 TFEQMSCFGEENHEPLRTQCALAASKLLKKPDQCRAVAVCSHLFWSGKSKDIEGGECHDG 605

Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
            R ++CLKKA R+A QCMD  VQ
Sbjct: 606 KRVMECLKKAVRIANQCMDATVQ 628


>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 202 KKAARVAQQCMDGGVQAHCWPSCWADTRCCGSAV 303
           +K+A V+  C+ G   A CW S WA  R   S++
Sbjct: 153 EKSAEVSPDCVTGN--ADCWSSTWASRRTTRSSL 184


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 138  GDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
            G  G P   GA   +   GLP E GPRGP
Sbjct: 918  GRDGLPGEPGARGDIGSRGLPGEDGPRGP 946



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 135  EGDQGR--PPGVGAELRVPRA-GLPEEGGPRGPA 227
            +G++GR  PPG      VP   G P   GPRGPA
Sbjct: 1084 QGEKGRMGPPGTSEPGNVPGPKGDPGPAGPRGPA 1117


>SB_21785| Best HMM Match : DIX (HMM E-Value=4.4)
          Length = 480

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 2   PSSRSIVLALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPG 148
           P SR  VL +R     AP+ + RP S  +  T   P R   +S G  PG
Sbjct: 403 PHSRKDVLIIRRGHEHAPNGQNRP-SLRQKTTPPAPQRGFHVSHGADPG 450


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 151 GRPVWALNYASRALDCLKKAARVAQQCMDG-GVQ 249
           G+    LN    A+DCL+KA   AQ+   G GVQ
Sbjct: 260 GKVAMKLNKVGYAMDCLEKALEAAQKEYGGKGVQ 293


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 132 LEGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
           + G+QG    VGA   V  AG P   GP GP
Sbjct: 464 IPGEQGPMGPVGAPGPVGNAGSPGSPGPSGP 494


>SB_58049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 443

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 132 LEGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
           + G QG P G GA       G+P   GP GP
Sbjct: 290 MPGPQGYPGGSGAPGIPGSPGMPGPPGPAGP 320


>SB_49583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 163

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +1

Query: 187 ALDCLKKAARVAQQCMDGGVQAHCWPSCWADTRC--CGS 297
           A DC +K     + C   G   H    C  DT+C  CG+
Sbjct: 109 ARDCPEKKESPGESCYRCGKSGHFARDCTDDTKCYKCGN 147


>SB_56580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 213 GRLLQAVQRAGRVVQRPHRAAVPGPLPE-EMRAERHGP 103
           GR+L+A +RAG+   +P   ++   +PE + +A R  P
Sbjct: 12  GRILEAFRRAGKTTIQPLTKSILPKIPEAKQQAARRIP 49


>SB_55403| Best HMM Match : Homeobox (HMM E-Value=8e-07)
          Length = 243

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 138 GDQGRPPGVGAELRVPRAGLPE 203
           G   R PG+G+E R+PR G  E
Sbjct: 135 GSGERMPGIGSEERMPRIGSGE 156


>SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47)
          Length = 779

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 82  LKKPDQSRAVALCSHLFWKGTRDGRPV 162
           +K P++ +         WKGTR GRP+
Sbjct: 183 IKTPEEEKKPKEPQSPVWKGTRTGRPM 209


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 177  VVQRPHRAAVPGPLPEEMRAERHGPALV 94
            V  RPH+A V  PLP+++  +   PA+V
Sbjct: 1076 VTGRPHQA-VQQPLPQQLPPQYRPPAIV 1102


>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1112

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
           +G  G P   GAE +V   GL  + GPRGP
Sbjct: 137 DGAPGAPGSPGAEGKV---GLTGQTGPRGP 163


>SB_19777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 132 LEGDQGRPPGVGAELRVPRAGLPEEGGPRGPAVH 233
           ++G +GR    G      ++GLP + GP GP  H
Sbjct: 27  VKGKEGRDGVKGERGSKGKSGLPGDKGPVGPPGH 60


>SB_46890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 187

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 232 MDGGVQAHCWPSCWADTRC 288
           ++G  +A CW +C A T+C
Sbjct: 44  IEGSTRALCWMACDAKTQC 62


>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
          Length = 406

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 308 LVTALPQ-QRVSAQQLGQQCACTPPSMH-CWATRAAFFR 198
           ++ A+P   + S  Q GQ+C C    +H C   R  F R
Sbjct: 112 IIGAMPSCTKPSRDQCGQRCECKDGRLHRCQRVRGEFTR 150


>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
          Length = 435

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 26  ALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARCG 166
           A R R    P    RP    R R R    +++R      PG AAR G
Sbjct: 229 AARPRQAARPRQASRPRQAARPRQRERTGQASRPRQRERPGQAARPG 275


>SB_6497| Best HMM Match : TP2 (HMM E-Value=3.8)
          Length = 262

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 177 RVPRAGLPEEGGPRGPAVH 233
           R P A  P++GGP GP VH
Sbjct: 30  RKPTA-TPDDGGPGGPRVH 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,008,306
Number of Sequences: 59808
Number of extensions: 130983
Number of successful extensions: 501
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)