Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1218
(316 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093036-1|AAH93036.1| 796|Homo sapiens vacuolar protein sortin... 109 1e-24
BC010362-1|AAH10362.1| 796|Homo sapiens vacuolar protein sortin... 109 1e-24
BC002414-1|AAH02414.1| 796|Homo sapiens vacuolar protein sortin... 109 1e-24
AY007112-1|AAG01989.1| 190|Homo sapiens protein ( Homo sapiens ... 109 1e-24
AL512769-1|CAC21686.1| 497|Homo sapiens hypothetical protein pr... 109 1e-24
AK223218-1|BAD96938.1| 796|Homo sapiens vacuolar protein sortin... 109 1e-24
AK023650-1|BAB14626.1| 661|Homo sapiens protein ( Homo sapiens ... 109 1e-24
AK001614-1|BAA91790.1| 796|Homo sapiens protein ( Homo sapiens ... 109 1e-24
AK000395-1|BAA91137.1| 190|Homo sapiens protein ( Homo sapiens ... 109 1e-24
AF191298-1|AAF02778.2| 796|Homo sapiens vacuolar sorting protei... 109 1e-24
AF186382-1|AAG40619.1| 796|Homo sapiens vacuolar protein sortin... 109 1e-24
AF183418-1|AAG09687.1| 796|Homo sapiens maternal-embryonic 3 pr... 109 1e-24
AF175265-1|AAF89953.1| 796|Homo sapiens vacuolar sorting protei... 109 1e-24
AL049637-3|CAI23011.1| 467|Homo sapiens DMRT-like family A2 pro... 30 1.2
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 29 2.2
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 29 2.2
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 29 2.2
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 29 2.2
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 29 2.2
AL583807-2|CAH69984.3| 1575|Homo sapiens laminin, gamma 3 protein. 29 2.9
AL583807-1|CAH69983.1| 1587|Homo sapiens laminin, gamma 3 protein. 29 2.9
AL355872-3|CAI39529.1| 1587|Homo sapiens laminin, gamma 3 protein. 29 2.9
AL355872-2|CAI39530.2| 1619|Homo sapiens laminin, gamma 3 protein. 29 2.9
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 29 2.9
AF041835-1|AAD36991.1| 1587|Homo sapiens laminin gamma 3 chain p... 29 2.9
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 29 2.9
AB208887-1|BAD92124.1| 1379|Homo sapiens laminin, gamma 3 precur... 29 2.9
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 29 2.9
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 29 2.9
AB002324-1|BAA20784.1| 927|Homo sapiens KIAA0326 protein. 29 2.9
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 29 2.9
AK091467-1|BAC03669.1| 619|Homo sapiens protein ( Homo sapiens ... 29 3.8
AK057427-1|BAB71481.1| 123|Homo sapiens protein ( Homo sapiens ... 29 3.8
AK055949-1|BAB71053.1| 352|Homo sapiens protein ( Homo sapiens ... 29 3.8
AB067504-1|BAB67810.2| 702|Homo sapiens KIAA1917 protein protein. 29 3.8
U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain... 28 5.0
U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain... 28 5.0
U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein. 28 5.0
S71381-1|AAB31085.1| 233|Homo sapiens prosome beta-subunit prot... 28 5.0
L22763-1|AAA16338.1| 542|Homo sapiens alpha-6 type IV collagen ... 28 5.0
D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein. 28 5.0
D26600-1|BAA05647.1| 264|Homo sapiens proteasome subunit HsN3 p... 28 5.0
D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein. 28 5.0
CR456820-1|CAG33101.1| 264|Homo sapiens PSMB4 protein. 28 5.0
BX538006-1|CAD97958.1| 1105|Homo sapiens hypothetical protein pr... 28 5.0
BT006917-1|AAP35563.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC098376-1|AAH98376.1| 1105|Homo sapiens KIAA1267 protein. 28 5.0
BC035892-1|AAH35892.1| 531|Homo sapiens KIAA1267 protein protein. 28 5.0
BC017486-1|AAH17486.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC017451-1|AAH17451.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC017307-1|AAH17307.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC012168-1|AAH12168.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC011768-1|AAH11768.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC010098-1|AAH10098.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC010088-1|AAH10088.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC008314-1|AAH08314.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
BC000331-1|AAH00331.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
AL589764-1|CAI16806.1| 264|Homo sapiens proteasome (prosome, ma... 28 5.0
AL137317-1|CAB70694.1| 576|Homo sapiens hypothetical protein pr... 28 5.0
AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha ... 28 5.0
AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha ... 28 5.0
AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha ... 28 5.0
AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha ... 28 5.0
AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha ... 28 5.0
AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha ... 28 5.0
AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha... 28 5.0
AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha... 28 5.0
AB033093-1|BAA86581.1| 1105|Homo sapiens KIAA1267 protein protein. 28 5.0
D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain... 28 6.6
BC035817-1|AAH35817.1| 255|Homo sapiens FLJ11286 protein protein. 28 6.6
BC026180-1|AAH26180.1| 163|Homo sapiens FLJ11286 protein protein. 28 6.6
BC010847-1|AAH10847.1| 163|Homo sapiens FLJ11286 protein protein. 28 6.6
AK096142-1|BAC04710.1| 240|Homo sapiens protein ( Homo sapiens ... 28 6.6
AK002148-1|BAA92109.1| 291|Homo sapiens protein ( Homo sapiens ... 28 6.6
Z71188-1|CAA94918.1| 270|Homo sapiens histone RNA hairpin-bindi... 27 8.8
Z15108-1|CAA78813.1| 584|Homo sapiens protein kinase C zeta pro... 27 8.8
U75679-1|AAB97091.1| 270|Homo sapiens histone stem-loop binding... 27 8.8
L14283-1|AAA36488.1| 592|Homo sapiens protein kinase C zeta pro... 27 8.8
BT007433-1|AAP36101.1| 270|Homo sapiens stem-loop (histone) bin... 27 8.8
BT007082-1|AAP35745.1| 592|Homo sapiens protein kinase C, zeta ... 27 8.8
BC060866-1|AAH60866.1| 995|Homo sapiens ankyrin repeat domain 3... 27 8.8
BC041418-1|AAH41418.1| 527|Homo sapiens ANKRD38 protein protein. 27 8.8
BC015703-1|AAH15703.1| 270|Homo sapiens stem-loop (histone) bin... 27 8.8
BC014908-1|AAH14908.1| 270|Homo sapiens stem-loop (histone) bin... 27 8.8
BC014270-1|AAH14270.1| 592|Homo sapiens protein kinase C, zeta ... 27 8.8
BC008058-1|AAH08058.1| 592|Homo sapiens protein kinase C, zeta ... 27 8.8
AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa 1-... 27 8.8
AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa 1-... 27 8.8
AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa 1-... 27 8.8
AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa 1-... 27 8.8
AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa 1-... 27 8.8
AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa 1-... 27 8.8
AL832644-1|CAD89966.1| 704|Homo sapiens hypothetical protein pr... 27 8.8
AL645703-1|CAI21535.1| 592|Homo sapiens protein kinase C, zeta ... 27 8.8
AL590822-9|CAI12484.1| 592|Homo sapiens protein kinase C, zeta ... 27 8.8
AL391845-5|CAI15438.1| 592|Homo sapiens protein kinase C, zeta ... 27 8.8
AL162739-5|CAI19298.1| 995|Homo sapiens novel protein protein. 27 8.8
AL139343-3|CAI19093.1| 995|Homo sapiens novel protein protein. 27 8.8
AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa 1-... 27 8.8
>BC093036-1|AAH93036.1| 796|Homo sapiens vacuolar protein sorting
35 homolog (S. cerevisiae) protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>BC010362-1|AAH10362.1| 796|Homo sapiens vacuolar protein sorting
35 homolog (S. cerevisiae) protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>BC002414-1|AAH02414.1| 796|Homo sapiens vacuolar protein sorting
35 homolog (S. cerevisiae) protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>AY007112-1|AAG01989.1| 190|Homo sapiens protein ( Homo sapiens
clone TCCCTA00141 mRNA sequence. ).
Length = 190
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 28 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 87
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 88 KRVMECLKKALKIANQCMDPSLQ 110
>AL512769-1|CAC21686.1| 497|Homo sapiens hypothetical protein
protein.
Length = 497
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 335 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 394
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 395 KRVMECLKKALKIANQCMDPSLQ 417
>AK223218-1|BAD96938.1| 796|Homo sapiens vacuolar protein sorting
35 variant protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>AK023650-1|BAB14626.1| 661|Homo sapiens protein ( Homo sapiens
cDNA FLJ13588 fis, clone PLACE1009298, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS35. ).
Length = 661
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 499 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 558
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 559 KRVMECLKKALKIANQCMDPSLQ 581
>AK001614-1|BAA91790.1| 796|Homo sapiens protein ( Homo sapiens
cDNA FLJ10752 fis, clone NT2RP3004480, weakly similar to
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS35. ).
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 ERVMECLKKALKIANQCMDPSLQ 716
>AK000395-1|BAA91137.1| 190|Homo sapiens protein ( Homo sapiens
cDNA FLJ20388 fis, clone KAIA4517. ).
Length = 190
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 28 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 87
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 88 KRVMECLKKALKIANQCMDPSLQ 110
>AF191298-1|AAF02778.2| 796|Homo sapiens vacuolar sorting protein
35 protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>AF186382-1|AAG40619.1| 796|Homo sapiens vacuolar protein sorting
35 protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>AF183418-1|AAG09687.1| 796|Homo sapiens maternal-embryonic 3
protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>AF175265-1|AAF89953.1| 796|Homo sapiens vacuolar sorting protein
35 protein.
Length = 796
Score = 109 bits (263), Expect = 1e-24
Identities = 48/83 (57%), Positives = 60/83 (72%)
Frame = +1
Query: 1 TFEQINCFGAENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYA 180
TFE++ CF EN EP+RTQCALAASKLLKKPDQ RAV+ C+HLFW G + L+
Sbjct: 634 TFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGG 693
Query: 181 SRALDCLKKAARVAQQCMDGGVQ 249
R ++CLKKA ++A QCMD +Q
Sbjct: 694 KRVMECLKKALKIANQCMDPSLQ 716
>AL049637-3|CAI23011.1| 467|Homo sapiens DMRT-like family A2
protein.
Length = 467
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +2
Query: 5 SSRSIVLALRTRSRCAPSARWR-----PASC*RSRTRAGPWRSARISSGRGPGT 151
SSRS ++ R R RCA S R R SC + R W SS RGP T
Sbjct: 26 SSRSASVSWRRRWRCAGSRRRRRTRRASCSCSTALPRGWRWPPPTASSPRGPPT 79
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
+GD+G P G GA+ G+P + GPRGP
Sbjct: 593 KGDKGEPGGPGAD------GVPGKDGPRGP 616
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
+GD+G P G GA+ G+P + GPRGP
Sbjct: 740 KGDKGEPGGPGAD------GVPGKDGPRGP 763
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
+GD+G P G GA+ G+P + GPRGP
Sbjct: 740 KGDKGEPGGPGAD------GVPGKDGPRGP 763
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
+GD+G P G GA+ G+P + GPRGP
Sbjct: 740 KGDKGEPGGPGAD------GVPGKDGPRGP 763
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
+GD+G P G GA+ G+P + GPRGP
Sbjct: 740 KGDKGEPGGPGAD------GVPGKDGPRGP 763
>AL583807-2|CAH69984.3| 1575|Homo sapiens laminin, gamma 3 protein.
Length = 1575
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 249 LHTAVHALLGHAGRLLQAVQRAGRVVQRPHRA--AVPGPLPEEMRAERHG 106
L TAV +L A +L VQ+ G P+ A A PG LP++ RAE G
Sbjct: 1221 LRTAVAEVLPEAESVLATVQQVGADTA-PYLALLASPGALPQKSRAEDLG 1269
>AL583807-1|CAH69983.1| 1587|Homo sapiens laminin, gamma 3 protein.
Length = 1587
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 249 LHTAVHALLGHAGRLLQAVQRAGRVVQRPHRA--AVPGPLPEEMRAERHG 106
L TAV +L A +L VQ+ G P+ A A PG LP++ RAE G
Sbjct: 1221 LRTAVAEVLPEAESVLATVQQVGADTA-PYLALLASPGALPQKSRAEDLG 1269
>AL355872-3|CAI39529.1| 1587|Homo sapiens laminin, gamma 3 protein.
Length = 1587
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 249 LHTAVHALLGHAGRLLQAVQRAGRVVQRPHRA--AVPGPLPEEMRAERHG 106
L TAV +L A +L VQ+ G P+ A A PG LP++ RAE G
Sbjct: 1221 LRTAVAEVLPEAESVLATVQQVGADTA-PYLALLASPGALPQKSRAEDLG 1269
>AL355872-2|CAI39530.2| 1619|Homo sapiens laminin, gamma 3 protein.
Length = 1619
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 249 LHTAVHALLGHAGRLLQAVQRAGRVVQRPHRA--AVPGPLPEEMRAERHG 106
L TAV +L A +L VQ+ G P+ A A PG LP++ RAE G
Sbjct: 1265 LRTAVAEVLPEAESVLATVQQVGADTA-PYLALLASPGALPQKSRAEDLG 1313
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 5 SSRSIVLALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
SSR+ R RSR P++R R RSRT PW+ +R S P T R
Sbjct: 1830 SSRTSSRRRRGRSRTPPTSRKRS----RSRTSPAPWKRSR--SRASPATHRR 1875
>AF041835-1|AAD36991.1| 1587|Homo sapiens laminin gamma 3 chain
precursor protein.
Length = 1587
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 249 LHTAVHALLGHAGRLLQAVQRAGRVVQRPHRA--AVPGPLPEEMRAERHG 106
L TAV +L A +L VQ+ G P+ A A PG LP++ RAE G
Sbjct: 1221 LRTAVAEVLPEAESVLATVQQVGADTA-PYLALLASPGALPQKSRAEDLG 1269
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 5 SSRSIVLALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
SSR+ R RSR P++R R RSRT PW+ +R S P T R
Sbjct: 862 SSRTSSRRRRGRSRTPPTSRKRS----RSRTSPAPWKRSR--SRASPATHRR 907
>AB208887-1|BAD92124.1| 1379|Homo sapiens laminin, gamma 3 precursor
variant protein.
Length = 1379
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 249 LHTAVHALLGHAGRLLQAVQRAGRVVQRPHRA--AVPGPLPEEMRAERHG 106
L TAV +L A +L VQ+ G P+ A A PG LP++ RAE G
Sbjct: 1025 LRTAVAEVLPEAESVLATVQQVGADTA-PYLALLASPGALPQKSRAEDLG 1073
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 5 SSRSIVLALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
SSR+ R RSR P++R R RSRT PW+ +R S P T R
Sbjct: 1830 SSRTSSRRRRGRSRTPPTSRKRS----RSRTSPAPWKRSR--SRASPATHRR 1875
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 5 SSRSIVLALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
SSR+ R RSR P++R R RSRT PW+ +R S P T R
Sbjct: 353 SSRTSSRRRRGRSRTPPTSRKRS----RSRTSPAPWKRSR--SRASPATHRR 398
>AB002324-1|BAA20784.1| 927|Homo sapiens KIAA0326 protein.
Length = 927
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 98 RAGPWRSARISSGRGPGTA 154
RAGPW +A +SSG P TA
Sbjct: 46 RAGPWNTAVLSSGMEPETA 64
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +2
Query: 5 SSRSIVLALRTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
SSR+ R RSR P++R R RSRT PW+ +R S P T R
Sbjct: 1878 SSRTSSRRRRGRSRTPPTSRKRS----RSRTSPAPWKRSR--SRASPATHRR 1923
>AK091467-1|BAC03669.1| 619|Homo sapiens protein ( Homo sapiens
cDNA FLJ34148 fis, clone FCBBF3012546. ).
Length = 619
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 287 QRVSAQQLGQQCACTPPSMHCWATRAAFFRQSSARDA*FSAHTGRP 150
QR S Q LG++C TP S + + + QSS S+ P
Sbjct: 424 QRPSVQHLGEECGVTPESENLTLSSSGAIDQSSCTGTPLSSTISSP 469
>AK057427-1|BAB71481.1| 123|Homo sapiens protein ( Homo sapiens
cDNA FLJ32865 fis, clone TESTI2003649, weakly similar to
GLYCOPROTEIN X PRECURSOR. ).
Length = 123
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +2
Query: 41 SRCAPSARWRPASC*RSRTRAGPWRS 118
+RCAPSA WR A RSRT P +S
Sbjct: 62 TRCAPSAGWR-AGTSRSRTGFSPAKS 86
>AK055949-1|BAB71053.1| 352|Homo sapiens protein ( Homo sapiens
cDNA FLJ31387 fis, clone NT2NE1000018, weakly similar to
SUPPRESSOR PROTEIN SRP40. ).
Length = 352
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 287 QRVSAQQLGQQCACTPPSMHCWATRAAFFRQSSARDA*FSAHTGRP 150
QR S Q LG++C TP S + + + QSS S+ P
Sbjct: 135 QRPSVQHLGEECGVTPESENLTLSSSGAIDQSSCTGTPLSSTISSP 180
>AB067504-1|BAB67810.2| 702|Homo sapiens KIAA1917 protein protein.
Length = 702
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -3
Query: 287 QRVSAQQLGQQCACTPPSMHCWATRAAFFRQSSARDA*FSAHTGRP 150
QR S Q LG++C TP S + + + QSS S+ P
Sbjct: 485 QRPSVQHLGEECGVTPESENLTLSSSGAIDQSSCTGTPLSSTISSP 530
>U47004-2|AAB19039.1| 1690|Homo sapiens collagen type IV a6 chain
protein.
Length = 1690
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 407 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 439
>U47004-1|AAB19038.1| 1691|Homo sapiens collagen type IV a6 chain
protein.
Length = 1691
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 440
>U04845-1|AAA19569.2| 1691|Homo sapiens A type IV collagen protein.
Length = 1691
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 440
>S71381-1|AAB31085.1| 233|Homo sapiens prosome beta-subunit
protein.
Length = 233
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 77 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 115
>L22763-1|AAA16338.1| 542|Homo sapiens alpha-6 type IV collagen
protein.
Length = 542
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 440
>D63562-1|BAA09791.1| 1600|Homo sapiens a6(IV) collagen protein.
Length = 1600
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 403 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 435
>D26600-1|BAA05647.1| 264|Homo sapiens proteasome subunit HsN3
protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>D21337-1|BAA04809.1| 1678|Homo sapiens collagen protein.
Length = 1678
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 407 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 439
>CR456820-1|CAG33101.1| 264|Homo sapiens PSMB4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BX538006-1|CAD97958.1| 1105|Homo sapiens hypothetical protein
protein.
Length = 1105
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 162 HRAAVPGPLPEEMRAERH 109
HRA +PG LP+ R +RH
Sbjct: 707 HRAPMPGSLPDSARKDRH 724
>BT006917-1|AAP35563.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC098376-1|AAH98376.1| 1105|Homo sapiens KIAA1267 protein.
Length = 1105
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 162 HRAAVPGPLPEEMRAERH 109
HRA +PG LP+ R +RH
Sbjct: 707 HRAPMPGSLPDSARKDRH 724
>BC035892-1|AAH35892.1| 531|Homo sapiens KIAA1267 protein protein.
Length = 531
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 162 HRAAVPGPLPEEMRAERH 109
HRA +PG LP+ R +RH
Sbjct: 133 HRAPMPGSLPDSARKDRH 150
>BC017486-1|AAH17486.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC017451-1|AAH17451.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC017307-1|AAH17307.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC012168-1|AAH12168.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC011768-1|AAH11768.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC010098-1|AAH10098.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC010088-1|AAH10088.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC008314-1|AAH08314.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>BC000331-1|AAH00331.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>AL589764-1|CAI16806.1| 264|Homo sapiens proteasome (prosome,
macropain) subunit, beta type, 4 protein.
Length = 264
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 308 LVTALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQS 192
L L Q + + LG + +P ++H W TRA + R+S
Sbjct: 108 LKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRS 146
>AL137317-1|CAB70694.1| 576|Homo sapiens hypothetical protein
protein.
Length = 576
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 162 HRAAVPGPLPEEMRAERH 109
HRA +PG LP+ R +RH
Sbjct: 178 HRAPMPGSLPDSARKDRH 195
>AL136080-2|CAI40758.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 440
>AL136080-1|CAI40756.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 407 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 439
>AL109943-2|CAI42995.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 440
>AL109943-1|CAI42993.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 407 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 439
>AL034369-3|CAI42047.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 440
>AL034369-2|CAI42045.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 407 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 439
>AL031177-13|CAI43140.1| 1691|Homo sapiens collagen type IV alpha 6
protein.
Length = 1691
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 408 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 440
>AL031177-12|CAI43139.1| 1690|Homo sapiens collagen type IV alpha 6
protein.
Length = 1690
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 132 LEGDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
L+GDQG P +GA R GLP GP GP
Sbjct: 407 LKGDQGNPGRTTIGAAGLPGRDGLPGPPGPPGP 439
>AB033093-1|BAA86581.1| 1105|Homo sapiens KIAA1267 protein protein.
Length = 1105
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 162 HRAAVPGPLPEEMRAERH 109
HRA +PG LP+ R +RH
Sbjct: 707 HRAPMPGSLPDSARKDRH 724
>D90279-1|BAA14323.1| 1838|Homo sapiens collagen alpha 1(V) chain
precursor protein.
Length = 1838
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGPA 227
+G QG P G+G V G P E G GP+
Sbjct: 1266 DGPQGPPGGIGNPGAVGEKGEPGEAGEPGPS 1296
>BC035817-1|AAH35817.1| 255|Homo sapiens FLJ11286 protein protein.
Length = 255
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 67 AASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYASRALDCLKKAARVAQQCMDGGV 246
A L+ D+ A + C H++W+ + V SR C K+ V M G
Sbjct: 98 AQDDLIPAVDRQFACSSCDHVWWRRVPQRKEV------SRCRKCRKRYEPVPADKMWGLA 151
Query: 247 QAHCWPSC 270
+ HC P C
Sbjct: 152 EFHC-PKC 158
>BC026180-1|AAH26180.1| 163|Homo sapiens FLJ11286 protein protein.
Length = 163
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 67 AASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYASRALDCLKKAARVAQQCMDGGV 246
A L+ D+ A + C H++W+ + V SR C K+ V M G
Sbjct: 98 AQDDLIPAVDRQFACSSCDHVWWRRVPQRKEV------SRCRKCRKRYEPVPADKMWGLA 151
Query: 247 QAHCWPSC 270
+ HC P C
Sbjct: 152 EFHC-PKC 158
>BC010847-1|AAH10847.1| 163|Homo sapiens FLJ11286 protein protein.
Length = 163
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 67 AASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYASRALDCLKKAARVAQQCMDGGV 246
A L+ D+ A + C H++W+ + V SR C K+ V M G
Sbjct: 98 AQDDLIPAVDRQFACSSCDHVWWRRVPQRKEV------SRCRKCRKRYEPVPADKMWGLA 151
Query: 247 QAHCWPSC 270
+ HC P C
Sbjct: 152 EFHC-PKC 158
>AK096142-1|BAC04710.1| 240|Homo sapiens protein ( Homo sapiens
cDNA FLJ38823 fis, clone LIVER2008751. ).
Length = 240
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 67 AASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYASRALDCLKKAARVAQQCMDGGV 246
A L+ D+ A + C H++W+ + V SR C K+ V M G
Sbjct: 47 AQDDLIPAVDRQFACSSCDHVWWRRVPQRKEV------SRCRKCRKRYEPVPADKMWGLA 100
Query: 247 QAHCWPSC 270
+ HC P C
Sbjct: 101 EFHC-PKC 107
>AK002148-1|BAA92109.1| 291|Homo sapiens protein ( Homo sapiens
cDNA FLJ11286 fis, clone PLACE1009581. ).
Length = 291
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 67 AASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYASRALDCLKKAARVAQQCMDGGV 246
A L+ D+ A + C H++W+ + V SR C K+ V M G
Sbjct: 98 AQDDLIPAVDRQFACSSCDHVWWRRVPQRKEV------SRCRKCRKRYEPVPADKMWGLA 151
Query: 247 QAHCWPSC 270
+ HC P C
Sbjct: 152 EFHC-PKC 158
>Z71188-1|CAA94918.1| 270|Homo sapiens histone RNA hairpin-binding
protein protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 38 RSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARC 163
R R A RWRP + R R ++ GP +RC
Sbjct: 31 RKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRC 72
>Z15108-1|CAA78813.1| 584|Homo sapiens protein kinase C zeta
protein.
Length = 584
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 68 LEEAFRLARQCRDEGLIIHVFPS 90
>U75679-1|AAB97091.1| 270|Homo sapiens histone stem-loop binding
protein protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 38 RSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARC 163
R R A RWRP + R R ++ GP +RC
Sbjct: 31 RKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRC 72
>L14283-1|AAA36488.1| 592|Homo sapiens protein kinase C zeta
protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 76 LEEAFRLARQCRDEGLIIHVFPS 98
>BT007433-1|AAP36101.1| 270|Homo sapiens stem-loop (histone)
binding protein protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 38 RSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARC 163
R R A RWRP + R R ++ GP +RC
Sbjct: 31 RKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRC 72
>BT007082-1|AAP35745.1| 592|Homo sapiens protein kinase C, zeta
protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 76 LEEAFRLARQCRDEGLIIHVFPS 98
>BC060866-1|AAH60866.1| 995|Homo sapiens ankyrin repeat domain 38
protein.
Length = 995
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 162 VGAELRVPRAGLPEEGGPRG 221
+ ELR+ AG +EGGP+G
Sbjct: 495 LSTELRIEEAGTEQEGGPQG 514
>BC041418-1|AAH41418.1| 527|Homo sapiens ANKRD38 protein protein.
Length = 527
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 162 VGAELRVPRAGLPEEGGPRG 221
+ ELR+ AG +EGGP+G
Sbjct: 27 LSTELRIEEAGTEQEGGPQG 46
>BC015703-1|AAH15703.1| 270|Homo sapiens stem-loop (histone)
binding protein protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 38 RSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARC 163
R R A RWRP + R R ++ GP +RC
Sbjct: 31 RKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRC 72
>BC014908-1|AAH14908.1| 270|Homo sapiens stem-loop (histone)
binding protein protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 38 RSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAARC 163
R R A RWRP + R R ++ GP +RC
Sbjct: 31 RKRRADGRRWRPEDAEEAEHRGAERRPESFTTPEGPKPRSRC 72
>BC014270-1|AAH14270.1| 592|Homo sapiens protein kinase C, zeta
protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 76 LEEAFRLARQCRDEGLIIHVFPS 98
>BC008058-1|AAH08058.1| 592|Homo sapiens protein kinase C, zeta
protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 76 LEEAFRLARQCRDEGLIIHVFPS 98
>AY168346-1|AAN86964.1| 2480|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2480
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 210 RLLQAVQ-RAGRVVQRPHRAAVPGPLPEEMRAERH 109
R LQ +Q RAGR+V P R A+ G L + + RH
Sbjct: 1654 RELQKLQGRAGRMVLEPPREALTGELLLQTQQRRH 1688
>AY168345-1|AAN86963.1| 2464|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2464
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 210 RLLQAVQ-RAGRVVQRPHRAAVPGPLPEEMRAERH 109
R LQ +Q RAGR+V P R A+ G L + + RH
Sbjct: 1638 RELQKLQGRAGRMVLEPPREALTGELLLQTQQRRH 1672
>AY168344-1|AAN86962.1| 2448|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2448
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 210 RLLQAVQ-RAGRVVQRPHRAAVPGPLPEEMRAERH 109
R LQ +Q RAGR+V P R A+ G L + + RH
Sbjct: 1622 RELQKLQGRAGRMVLEPPREALTGELLLQTQQRRH 1656
>AY168343-1|AAN86961.1| 2432|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2432
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 210 RLLQAVQ-RAGRVVQRPHRAAVPGPLPEEMRAERH 109
R LQ +Q RAGR+V P R A+ G L + + RH
Sbjct: 1606 RELQKLQGRAGRMVLEPPREALTGELLLQTQQRRH 1640
>AY168342-1|AAN86960.1| 2416|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2416
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 210 RLLQAVQ-RAGRVVQRPHRAAVPGPLPEEMRAERH 109
R LQ +Q RAGR+V P R A+ G L + + RH
Sbjct: 1590 RELQKLQGRAGRMVLEPPREALTGELLLQTQQRRH 1624
>AY168341-1|AAN86959.1| 2400|Homo sapiens retinitis pigmentosa 1-like
1 protein protein.
Length = 2400
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 210 RLLQAVQ-RAGRVVQRPHRAAVPGPLPEEMRAERH 109
R LQ +Q RAGR+V P R A+ G L + + RH
Sbjct: 1574 RELQKLQGRAGRMVLEPPREALTGELLLQTQQRRH 1608
>AL832644-1|CAD89966.1| 704|Homo sapiens hypothetical protein
protein.
Length = 704
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 162 VGAELRVPRAGLPEEGGPRG 221
+ ELR+ AG +EGGP+G
Sbjct: 204 LSTELRIEEAGTEQEGGPQG 223
>AL645703-1|CAI21535.1| 592|Homo sapiens protein kinase C, zeta
protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 76 LEEAFRLARQCRDEGLIIHVFPS 98
>AL590822-9|CAI12484.1| 592|Homo sapiens protein kinase C, zeta
protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 76 LEEAFRLARQCRDEGLIIHVFPS 98
>AL391845-5|CAI15438.1| 592|Homo sapiens protein kinase C, zeta
protein.
Length = 592
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 199 LKKAARVAQQCMDGGVQAHCWPS 267
L++A R+A+QC D G+ H +PS
Sbjct: 76 LEEAFRLARQCRDEGLIIHVFPS 98
>AL162739-5|CAI19298.1| 995|Homo sapiens novel protein protein.
Length = 995
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 162 VGAELRVPRAGLPEEGGPRG 221
+ ELR+ AG +EGGP+G
Sbjct: 495 LSTELRIEEAGTEQEGGPQG 514
>AL139343-3|CAI19093.1| 995|Homo sapiens novel protein protein.
Length = 995
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 162 VGAELRVPRAGLPEEGGPRG 221
+ ELR+ AG +EGGP+G
Sbjct: 495 LSTELRIEEAGTEQEGGPQG 514
>AJ491324-1|CAD36957.1| 2464|Homo sapiens retinitis pigmentosa 1-like
protein 1 protein.
Length = 2464
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 210 RLLQAVQ-RAGRVVQRPHRAAVPGPLPEEMRAERH 109
R LQ +Q RAGR+V P R A+ G L + + RH
Sbjct: 1638 RELQKLQGRAGRMVLEPPREALTGELLLQTQQRRH 1672
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,877,009
Number of Sequences: 237096
Number of extensions: 744843
Number of successful extensions: 4589
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 3548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4573
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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