Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1218
(316 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeas... 57 2e-09
DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar prot... 57 2e-09
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 28 1.6
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ... 28 1.6
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ... 28 1.6
Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical pr... 27 2.1
AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle colla... 27 2.1
AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle colla... 27 2.1
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 27 2.8
U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical pr... 27 2.8
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 27 3.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 27 3.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 26 5.0
Z68215-1|CAA92450.1| 517|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 25 8.7
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 25 8.7
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 25 8.7
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 25 8.7
Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical pr... 25 8.7
U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in b... 25 8.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 25 8.7
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 25 8.7
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 25 8.7
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 25 8.7
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 25 8.7
AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen prot... 25 8.7
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 25 8.7
>U53332-5|AAK31535.2| 821|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 35 protein.
Length = 821
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +1
Query: 31 ENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYASRALDCLKKA 210
EN +P+ Q LAA+K+ KKPDQ R++ + L+W G + + +D L+KA
Sbjct: 662 ENWQPLANQTVLAAAKMFKKPDQVRSLVTVAALYWHGQTLETNGEKMKNGKKVVDILRKA 721
Query: 211 ARVAQQCMDGGVQ 249
A++A++C++ VQ
Sbjct: 722 AKIARECLEPLVQ 734
>DQ178636-1|ABD75715.1| 826|Caenorhabditis elegans vacuolar protein
sorting factor protein.
Length = 826
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/73 (35%), Positives = 44/73 (60%)
Frame = +1
Query: 31 ENAEPMRTQCALAASKLLKKPDQSRAVALCSHLFWKGTRDGRPVWALNYASRALDCLKKA 210
EN +P+ Q LAA+K+ KKPDQ R++ + L+W G + + +D L+KA
Sbjct: 667 ENWQPLANQTVLAAAKMFKKPDQVRSLVTVAALYWHGQTLETNGEKMKNGKKVVDILRKA 726
Query: 211 ARVAQQCMDGGVQ 249
A++A++C++ VQ
Sbjct: 727 AKIARECLEPLVQ 739
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
+G+ GRP G R R G P E G RGP
Sbjct: 183 QGNSGRPGMDGMPGRNGRCGRPGEQGERGP 212
>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
protein Y47D3B.5b protein.
Length = 1136
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 76 KLLKKPDQSRAVALCSHLFWKGTRDGR 156
KLLKK D+S+ ++C + K ++G+
Sbjct: 850 KLLKKKDESQQTSICDDVVGKSKKEGK 876
>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
protein Y47D3B.5a protein.
Length = 1088
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 76 KLLKKPDQSRAVALCSHLFWKGTRDGR 156
KLLKK D+S+ ++C + K ++G+
Sbjct: 850 KLLKKKDESQQTSICDDVVGKSKKEGK 876
>Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical
protein ZK836.1 protein.
Length = 324
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +3
Query: 153 PPGVGAELRVP----RAGLPEEGGPRGPA 227
PPGV E+ VP AG E GPRGP+
Sbjct: 263 PPGVEGEVGVPGYQGSAGPDGEEGPRGPS 291
>AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle collagen
LON-3 protein.
Length = 324
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +3
Query: 153 PPGVGAELRVP----RAGLPEEGGPRGPA 227
PPGV E+ VP AG E GPRGP+
Sbjct: 263 PPGVEGEVGVPGYQGSAGPDGEEGPRGPS 291
>AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle collagen
protein LON-3 protein.
Length = 324
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Frame = +3
Query: 153 PPGVGAELRVP----RAGLPEEGGPRGPA 227
PPGV E+ VP AG E GPRGP+
Sbjct: 263 PPGVEGEVGVPGYQGSAGPDGEEGPRGPS 291
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +3
Query: 138 GDQGRP--PGVGAELRVPRAGLPEEGGPRGP 224
G QG P PG E + + G P GPRGP
Sbjct: 200 GSQGPPGPPGHSDEPKPGQPGQPGRAGPRGP 230
>U88170-2|AAB42250.1| 203|Caenorhabditis elegans Hypothetical
protein C10G11.9 protein.
Length = 203
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 32 RTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
R+RSR P R R S SR+R+G RS+R S R + AR
Sbjct: 131 RSRSRSRP--RTRSGSRSSSRSRSGSRRSSRRRSRRRSSSKAR 171
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 52 TQCALAASKLLKKPDQSRAVALCSHLFWKGTRD-------GRPVWALNYASRALDCLKKA 210
TQ L S+ L + + A+++C H + +D W NYA R + C+++A
Sbjct: 1238 TQVVLLTSRFLLQNQSTVALSVCHHDLVEMEKDHVHLAAQSSTTWNENYAGRRMLCVRRA 1297
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 132 LEGDQGRPPGVGAELRVPRAGLPEEGGPRGPA 227
L G+ GRPP E P P GP GPA
Sbjct: 117 LNGNPGRPPKEPCEPLTPPPCKPCPEGPPGPA 148
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 132 LEGDQGRPPGVGAELRVPRAGLPEEGGPRGPA 227
L G+ GRPP E P P GP GPA
Sbjct: 115 LNGNPGRPPKEPCEPITPPPCKPCPEGPPGPA 146
>Z68215-1|CAA92450.1| 517|Caenorhabditis elegans Hypothetical
protein C53B4.1 protein.
Length = 517
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 109 VALCSHLFWKGTRDGRPVWALNYASRALDCLKKAARVAQQCMDGGVQA 252
+ +C +L WKG+ + L YA+++L CL+ A + M V+A
Sbjct: 381 ILICLYLNWKGSFLYLSAYTLAYATQSL-CLEAAYLSLVELMPTDVRA 427
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 777 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 806
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 380 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 409
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 740 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 769
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 252 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 281
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 777 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 806
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 380 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 409
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 740 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 769
>Z46791-2|CAA86756.1| 283|Caenorhabditis elegans Hypothetical
protein C09G5.3 protein.
Length = 283
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRGP 224
+G+ G P GA+ ++G P GP+GP
Sbjct: 159 DGEPGVPGNDGADGTPGKSGAPGGKGPQGP 188
>U80455-10|AAB37887.2| 395|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 11 protein.
Length = 395
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -3
Query: 299 ALPQQRVSAQQLGQQCACTPPSMHCWATRAAFFRQSSARDA*FSAHTGR 153
A PQQ+ QQ QQC T S + ++ +Q+ A+ A+TGR
Sbjct: 136 ACPQQQQPQQQCQQQCQTTCQSDDQY-SQQLIQQQTYAQPGQIPAYTGR 183
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = +3
Query: 120 LASLLEGDQ----GRPPGVGAELRVPRAGLPEEGGPRGP 224
+A+ +GDQ G P G GA P P G P GP
Sbjct: 425 VAAAQQGDQKSQHGAPGGSGAPPPGPPGAYPGNGAPGGP 463
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 32 RTRSRCAPSARWRPASC*RSRTRAGPWRSARISSGRGPGTAAR 160
R RSR +R R RSRTR+ P R R S R + +R
Sbjct: 120 RRRSRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSR 162
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 252 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 281
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 380 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 409
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 135 EGDQGRPPGV-GAELRVPRAGLPEEGGPRGP 224
+G QG PPG+ GA R +G+ + GP+GP
Sbjct: 719 DGPQG-PPGLPGAPGRDGTSGVEGQRGPQGP 748
>AF039720-3|AAB96697.1| 281|Caenorhabditis elegans Collagen protein
54 protein.
Length = 281
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 135 EGDQGRPPGVGAELRVPRAGLPEEGGPRG 221
+G +G P GA + AG P + G RG
Sbjct: 170 QGSEGEPGDAGATGEIGVAGAPGKNGNRG 198
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Frame = +3
Query: 153 PPGVGAELRVPRA-----GLPEEGGPRGPA 227
PPG A + P GLP GPRGPA
Sbjct: 131 PPGTNACQKCPTGAPGPPGLPGPKGPRGPA 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,610,222
Number of Sequences: 27780
Number of extensions: 94938
Number of successful extensions: 525
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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