Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1217
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    27   1.1  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    26   2.4  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    26   2.4  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   3.2  
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    25   5.6  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    25   5.6  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   5.6  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   7.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    24   7.4  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    24   9.8  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    24   9.8  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    24   9.8  

>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
 Frame = +3

Query: 93  TVTVDPCQSFNLASEQVNFLEVTAG-----FLRFDDELGQAATSRGGPVPNSPYSESYYI 257
           T+ V+P   FN  S  + F E   G         DDE          P+P  P + SY  
Sbjct: 69  TLNVEPLYGFN-NSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSA 127

Query: 258 HW 263
           HW
Sbjct: 128 HW 129


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 284 HVVVKGRPVNVIRLTIGRIG 225
           HVV+KGRP  ++ ++  + G
Sbjct: 32  HVVIKGRPCKIVDMSTSKTG 51


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 284 HVVVKGRPVNVIRLTIGRIG 225
           HVV+KGRP  ++ ++  + G
Sbjct: 32  HVVIKGRPCKIVDMSTSKTG 51


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 121 NDWHGSTVTVRPAT 80
           NDWHG+  TV P T
Sbjct: 580 NDWHGNPSTVPPPT 593


>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 270 FYNDVTGKTLALPNLIVLHHIPLSPAWRNSEE 365
           F   V+GK   L NL  L   PL+   +N EE
Sbjct: 98  FGKTVSGKVRNLGNLTPLEQTPLASVGKNLEE 129


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -2

Query: 245 LTIGRIGYRAPPGSCGLTQLIIKPQK---TGGDFKEIDLLGRQIERLARVNRYSQT 87
           L +  I  R P     L+ LI + Q+     GDFK  D   R I  L  +NR++ T
Sbjct: 318 LLVSHIRERLPDIKARLSTLISQTQQQLNNYGDFKLSDQSQRGIILLQAMNRFANT 373


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 109 GSTVTVRPATRQTLIRTSLTATKAGVAN 26
           G  + + P   Q LIR S+ +T   +AN
Sbjct: 837 GCLLRIEPNYEQNLIRLSIRSTNTSIAN 864


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 171 LRFDDELGQAATSRGGPVPNS 233
           + F D+LG+A    G P PNS
Sbjct: 720 INFSDKLGRAVMVVGMPFPNS 740


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 51  VSDVRIKVCLVAGLTVTVDPCQSFNLASEQVN 146
           V D+RI   +  G+  T+D    FN  +E ++
Sbjct: 426 VKDIRISSLITEGVNPTLDEVSKFNPNNEDLD 457


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 257 SLADLLQRRDWENPGVTQLNRLASHPPFAS 346
           SL    +  DW + G+     LA +PPF S
Sbjct: 370 SLKPYNKAADWWSLGILIFEMLAGYPPFYS 399


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 175 RRKPAVTSRKLTCSDARLND 116
           R  P +   KL CSD  LND
Sbjct: 188 RNIPTMGGTKLVCSDVLLND 207


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -3

Query: 178 NRRKPAVTSRKL 143
           NR+KP+VT RKL
Sbjct: 369 NRKKPSVTKRKL 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,035
Number of Sequences: 5004
Number of extensions: 32829
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)