Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1217
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747...    31   0.25 
10_04_0014 + 7578921-7579649                                           29   1.0  
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847...    28   2.4  
09_02_0036 + 3217163-3217584,3217752-3218322                           27   4.1  
06_01_1086 + 8890806-8890865,8890970-8891055,8891366-8891440,889...    27   4.1  
03_05_0532 - 25322822-25322932,25323018-25323050,25323187-253232...    27   4.1  
06_03_0884 + 25651238-25652164,25653851-25654504                       27   5.5  
01_05_0029 + 17345520-17345765,17345883-17346638                       27   5.5  
04_04_1115 + 31008213-31008707,31009385-31009689,31010848-310111...    27   7.2  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    26   9.6  
03_01_0421 + 3234978-3235020,3236114-3236319,3236383-3236400           26   9.6  
03_01_0193 + 1541884-1543064,1543153-1544647                           26   9.6  

>03_02_0326 +
           7474352-7474448,7474913-7474977,7475105-7475191,
           7475393-7475440,7476086-7476142,7476588-7476687,
           7476875-7477185,7477298-7477667,7478745-7478876,
           7479362-7479575,7479650-7479710,7480098-7480292
          Length = 578

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 180 DDELGQAATSRGGPVPNSPYSESYYIHWPTFYNDVTGKTLALPNL 314
           DD + Q ATS GG + ++  S  YY   P   N    +T  LP L
Sbjct: 283 DDLVHQIATSSGGDIRHAIMSLQYYCLNPRRLNSALARTAILPGL 327


>10_04_0014 + 7578921-7579649
          Length = 242

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 333 GCDARR--LSWVTPGFSQSRRCKRSASECNTTH 241
           GC  +R  L+W+T  FSQ + C+RS +     H
Sbjct: 2   GCQKKRHLLTWLTRRFSQRKPCRRSTATHGCCH 34


>01_05_0592 -
           23483834-23484285,23484357-23484455,23484534-23484702,
           23485049-23485363,23485561-23485767,23485852-23486106,
           23486575-23486736
          Length = 552

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 235 GELGTGPPLEVAA*PSSSSNRRKPAVTSRKLTCSD 131
           G+   GP ++  A PSS     +P    RKL  SD
Sbjct: 161 GQASGGPKIQTVAQPSSPKPTNQPGSRKRKLVLSD 195


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 243 ESYYIHWPTFYNDV-TGKTLALPNLIVLHH 329
           ES    W  F N V +G TL++PN ++L H
Sbjct: 67  ESISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_01_1086 +
           8890806-8890865,8890970-8891055,8891366-8891440,
           8892780-8892921,8893304-8893490,8893944-8894425,
           8894595-8894975,8895056-8895100,8896486-8896639,
           8897750-8897895,8898016-8898099
          Length = 613

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/57 (28%), Positives = 22/57 (38%)
 Frame = -1

Query: 348 KLAKGGCDARRLSWVTPGFSQSRRCKRSASECNTTHYRANWVPGPPWKLRLDPAHHQ 178
           K A G  DA +  WV+       RC       +  H    W PG P  ++ DP   +
Sbjct: 89  KNASGSVDASKHKWVSNPTKACPRCNHIIDNSDVVH---QW-PGLPRGVKFDPTDQE 141


>03_05_0532 -
           25322822-25322932,25323018-25323050,25323187-25323222,
           25323301-25323336,25323431-25323479,25323671-25323762,
           25323899-25323984,25324098-25324261,25325573-25325601,
           25325697-25325807,25326471-25326512,25326597-25326647,
           25326848-25326898,25327325-25327382,25327823-25327908,
           25328008-25328056,25328155-25328273,25328504-25328590,
           25328726-25328787,25329222-25329290,25329884-25330133
          Length = 556

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = +3

Query: 105 DPCQSFNLASEQVNFLEVTAGFLRFDDELG----QAATSRGGPVPNSP 236
           D C S  L S  +  ++ T  +LR+ D+L     +A    GGP    P
Sbjct: 366 DDCMSSILVSRLIRAMQPTRSYLRWSDDLHKMFVEAVAYHGGPYEAKP 413


>06_03_0884 + 25651238-25652164,25653851-25654504
          Length = 526

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +2

Query: 218 PGTQFAL**VVLHSLADLLQRRDWENPGVTQLNRL 322
           PG  FAL  + L +LA LL   DWE PG+    +L
Sbjct: 464 PGVAFALANIEL-TLASLLFHFDWEVPGMADPAKL 497


>01_05_0029 + 17345520-17345765,17345883-17346638
          Length = 333

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 175 GLMMSWVKPQLPGGARYPIRPIVSRITFTGRP 270
           G+  + V  QLPGG R P    +  +  TG+P
Sbjct: 194 GIDYAAVTVQLPGGERVPFLFTIKNLVATGKP 225


>04_04_1115 +
           31008213-31008707,31009385-31009689,31010848-31011108,
           31011193-31011401,31011490-31011783,31011861-31011901,
           31011987-31012055,31012164-31012264,31012351-31012435,
           31012539-31012637,31012731-31012799,31012909-31013040,
           31013128-31013222,31013340-31013421
          Length = 778

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 118 DWHGSTVTVRPATRQTLIRTSLTATKAGVANRKRI 14
           DWHGS V V+  T Q +    L      +A  KR+
Sbjct: 531 DWHGSDVAVKVLTDQDVGEAQLKEFLREIAIMKRV 565


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 276 NDVTGKTLALPNLIVLHHI 332
           N +TG+ +ALP++I + H+
Sbjct: 171 NPITGEQIALPSVITIEHV 189


>03_01_0421 + 3234978-3235020,3236114-3236319,3236383-3236400
          Length = 88

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 154 KSPPVFCGLMMSWVKPQLPGGARYPIRPIVSRITFTGRP 270
           ++P  + G    W +PQ P GAR  +RP  SR  FT  P
Sbjct: 46  RAPRKYFGRNRLWPRPQNPPGAR-RLRPF-SRYPFTYIP 82


>03_01_0193 + 1541884-1543064,1543153-1544647
          Length = 891

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 141 VNFLEVTAGFLRFDDELGQAATSRGGPVPNSPYSESYYIHWPTFYNDVTGKTLALPNL 314
           V  + VT   L   D L  +     GP+P+   + S   H+   YN ++G   ALP L
Sbjct: 426 VGGIPVTLAQLTNLDLLDLSENQLTGPIPSELGNLSNLTHFNVSYNGLSGMIPALPVL 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,817
Number of Sequences: 37544
Number of extensions: 255933
Number of successful extensions: 741
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)