Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1217
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal tr...    27   6.4  
AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation su...    27   6.4  
Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable abnorm...    26   8.5  
AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical ...    26   8.5  

>U21319-7|AAL16307.1|  469|Caenorhabditis elegans Hypothetical
           protein C30G12.1 protein.
          Length = 469

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 178 LMMSWVKPQLPGGARYPIRPIVSRITFTGRPFTTT 282
           L  S  KPQLP  A  P+ P++  IT    P+  T
Sbjct: 230 LAASQFKPQLPPVASVPVAPVID-ITKIDSPYRAT 263


>AY428645-1|AAR27937.1|  892|Caenorhabditis elegans microsomal
           triglyceride transferprotein protein.
          Length = 892

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +3

Query: 45  VAVSDVRIKVCLVAGLTVTVDPCQSFN---LASEQVN 146
           V V DVR+ V L++GLT+ VD   + +   LAS +V+
Sbjct: 738 VPVRDVRLSVPLLSGLTLDVDSVGAISMRVLASAEVS 774


>AF045645-4|AAC02607.3|  892|Caenorhabditis elegans Defecation
           suppressor of clk-1protein 4 protein.
          Length = 892

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +3

Query: 45  VAVSDVRIKVCLVAGLTVTVDPCQSFN---LASEQVN 146
           V V DVR+ V L++GLT+ VD   + +   LAS +V+
Sbjct: 738 VPVRDVRLSVPLLSGLTLDVDSVGAISMRVLASAEVS 774


>Z49937-3|CAA90186.2|  455|Caenorhabditis elegans Hypothetical
           protein F14F3.1a protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 222 VPNSPYSESYYIHWPTFYNDVTGKTLALP 308
           V N PY+ S+Y  WP   N   G    +P
Sbjct: 151 VDNFPYNSSWYGQWPIPMNGAVGLNPFVP 179


>U31537-1|AAA82991.1|  455|Caenorhabditis elegans variable
           abnormal-3 protein.
          Length = 455

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 222 VPNSPYSESYYIHWPTFYNDVTGKTLALP 308
           V N PY+ S+Y  WP   N   G    +P
Sbjct: 151 VDNFPYNSSWYGQWPIPMNGAVGLNPFVP 179


>AC084153-1|AAK84596.1|  385|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.7 protein.
          Length = 385

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 193 PSSSSNRRKPAVTSRKLTCSD 131
           PS+S+    PAVTS + TCS+
Sbjct: 43  PSTSTTSSNPAVTSIESTCSE 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,842
Number of Sequences: 27780
Number of extensions: 200148
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)